Browse Element(s) Details


Os.27304.1.A1_at

Description gb:AK066343.1
DB_XREF= gi:32976361
TID=Os.27304.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.27304 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-046-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013066L21, full insert sequence.
FL= gb:AK104906.1 gb:AK066343.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5266011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52640Os.27084.2.S1_a_at11/114+31098527..31108979SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52640Os.27084.1.A1_a_at11/114+31098527..31108979SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52640Os.27084.2.S1_at11/114+31098527..31108979SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52640Os.27084.2.S1_x_at11/114+31098527..31108979SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52640Os.27084.1.A2_at10/114+31098527..31108979SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52640Os.47793.1.A1_at6/114+31098527..31108979SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52650Os.7420.1.S1_s_at11/114+31110670..31112273expressed protein
LOC_Os04g52650OsAffx.26576.1.S1_at10/114+31110670..31112273expressed protein
LOC_Os04g52660Os.27304.1.A1_at11/114+31121219..31125663expressed protein
LOC_Os04g52670OsAffx.14380.1.S1_s_at11/114+31130595..31131661Auxin responsive protein, expressed
LOC_Os04g52680OsAffx.26577.1.S1_at4/114+31135177..31136141hypothetical protein
LOC_Os04g52690Os.25046.1.S1_at10/114+31145050..31150338AAA-type ATPase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27304.1.A1_at--103--6511Chr04:31124382..31124406 (25 bp)
GATATCGGTCAAGGTTCAGTTGCAA
LOC_Os04g52660
Os.27304.1.A1_at--407--9091Chr04:31124435..31124459 (25 bp)
TGCTCACCAAGCGATTAGTCCAACA
LOC_Os04g52660
Os.27304.1.A1_at--846--8951Chr04:31125255..31125274 (20 bp)
TGAAAAGGTCGCGTTCCTTCGGTGG
LOC_Os04g52660
Os.27304.1.A1_at--581--8571Chr04:31125275..31125299 (25 bp)
TGGTTGCAGCTCATCCGTTGAAATT
LOC_Os04g52660
Os.27304.1.A1_at--1087--6051Chr04:31125302..31125326 (25 bp)
GAGTTGATGACTTCTTTAGCCGGAC
LOC_Os04g52660
Os.27304.1.A1_at--59--8591Chr04:31125364..31125388 (25 bp)
TGGTTTCGGTGTTCTCTTGTGCTTC
LOC_Os04g52660
Os.27304.1.A1_at--767--6511Chr04:31125499..31125523 (25 bp)
GATATACTGGTTTCGCTTTTGTCTT
LOC_Os04g52660
Os.27304.1.A1_at--1065--4291Chr04:31125528..31125552 (25 bp)
CCTATAGGGCGTTTTCTTGTGGCGT
LOC_Os04g52660
Os.27304.1.A1_at--853--10831Chr04:31125544..31125568 (25 bp)
TTGTGGCGTGGAATTATCACTCCAT
LOC_Os04g52660
Os.27304.1.A1_at--205--251Chr04:31125567..31125591 (25 bp)
ATATCCTTTAATAGACCGTCAGTGA
LOC_Os04g52660
Os.27304.1.A1_at--914--6311Chr04:31125590..31125614 (25 bp)
GATGAATACTGCCACTCACAAAATT
LOC_Os04g52660
Target Sequence 
GATATCGGTCAAGGTTCAGTTGCAAGAAACAATCCAACAAGGCCAGAAACAACTGCTCACCAAGCGATTAGTCCAACAAC
GCAACAGATAACTACGGAGTTTGTTCAACATTCAGAATCACAATTTCAAGAATACAACTCCCAGATGGATGGAAGAGTCA
GAATTGTTGAAAGTGGCATGAAAAGGTCGCGTTCCTTCGGTGGTGGTTGCAGCTCATCCGTTGAAATTTCGAGTTGATGA
CTTCTTTAGCCGGACTGGCCGGAAGAATGACCAGTTCAGTGACTTGGGTTGGTGGTTTCGGTGTTCTCTTGTGCTTCTCA
TCGAGGGGAGACTTAATTGAATGAGTTAAGGGAGCTGTTAGAATATTTAGTTAGTGTAGTCTATGTCAATTTTTACCATT
TTTAGAACAATCACAATTTGTGGCTTGGATATACTGGTTTCGCTTTTGTCTTAAGCCCTATAGGGCGTTTTCTTGTGGCG
TGGAATTATCACTCCATATCCTTTAATAGACCGTCAGTGATGAATACTGCCACTCACAAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27304.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis