Browse Element(s) Details


OsAffx.26590.2.S1_at

Description tigr:9632.m05167
TID=OsAffx.26590.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5326010/11Common central domain of tyrosinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53230Os.20702.1.S1_at11/114+31481897..31484526Aminomethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os04g53240Os.14109.1.S1_at8/114+31497308..31500105Autophagy-related protein 8 precursor, putative, expressed
LOC_Os04g53250OsAffx.14394.1.S1_at10/114+31502654..31504041hypothetical protein
LOC_Os04g53250Os.55517.1.S1_x_at1/114+31502654..31504041hypothetical protein
LOC_Os04g53260OsAffx.26590.2.S1_at10/114+31508706..31510284Common central domain of tyrosinase family protein, expressed
LOC_Os04g53270NANA4+31511700..31514653retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g53280Os.10703.2.S1_x_at1/114+31514970..31521059retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g53290Os.55517.1.S1_x_at1/114+31521750..31522385Polyphenol oxidase I, chloroplast, putative
LOC_Os04g53290OsAffx.14394.1.S1_at1/114+31521750..31522385Polyphenol oxidase I, chloroplast, putative
LOC_Os04g53300Os.55517.1.S1_x_at11/114+31530077..31532540Common central domain of tyrosinase family protein, expressed
LOC_Os04g53310Os.23163.1.S1_at11/114+31532517..31540357Soluble starch synthase 3, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26590.2.S1_at--706--6291Chr04:31509204..31509228 (25 bp)
GATGATCCCCGCAGCTTCAAGCAGC
LOC_Os04g53260
OsAffx.26590.2.S1_at--133--4651NONE
GCGTACGACCAGGTACGGATGTACC
NONE
OsAffx.26590.2.S1_at--555--4251Chr04:31510115..31510139 (25 bp)
CCGGCATGTCGTTCCCGGCGATCTA
LOC_Os04g53260
OsAffx.26590.2.S1_at--1058--8371Chr04:31510131..31510155 (25 bp)
GGCGATCTACGCCAACTGCAGGCTG
LOC_Os04g53260
OsAffx.26590.2.S1_at--524--451Chr04:31510135..31510159 (25 bp)
ATCTACGCCAACTGCAGGCTGTCGT
LOC_Os04g53260
OsAffx.26590.2.S1_at--333--891Chr04:31510150..31510174 (25 bp)
AGGCTGTCGTCGCTGTACGACCCAA
LOC_Os04g53260
OsAffx.26590.2.S1_at--61--7231Chr04:31510158..31510182 (25 bp)
GTCGCTGTACGACCCAAGGCGAAAT
LOC_Os04g53260
OsAffx.26590.2.S1_at--676--8751Chr04:31510163..31510187 (25 bp)
TGTACGACCCAAGGCGAAATCAGGC
LOC_Os04g53260
OsAffx.26590.2.S1_at--591--2951Chr04:31510173..31510197 (25 bp)
AAGGCGAAATCAGGCGCACCAGCCA
LOC_Os04g53260
OsAffx.26590.2.S1_at--513--5591Chr04:31510178..31510202 (25 bp)
GAAATCAGGCGCACCAGCCACCGTT
LOC_Os04g53260
OsAffx.26590.2.S1_at--522--3231Chr04:31510215..31510239 (25 bp)
CAACTACAACGGAACCGACCTGTCG
LOC_Os04g53260
Target Sequence 
GATGATCCCCGCAGCTTCAAGCAGCAGTGGCGCGTGCACTGCGCCTACTGCGACGGCGCGTACGACCAGGTACGGATGTA
CCTGTACTTCCACGAGAGAATACTGGGCAAGCTCATCGGCGACGAGACGTTTGCGCTGCCGTTCTGGAACTGGGACGCGC
CGGCCGGCATGTCGTTCCCGGCGATCTACGCCAACTGCAGGCTGTCGTCGCTGTACGACCCAAGGCGAAATCAGGCGCAC
CAGCCACCGTTCCCGCTCGACCTCAACTACAACGGAACCGACCTGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26590.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis