Browse Element(s) Details


OsAffx.26669.1.S1_at

Description tigr:9632.m05836
TID=OsAffx.26669.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Lipase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4303011/11Lipase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42990OsAffx.14249.1.S1_at9/114+25213102..25219840Ssl1-like family protein, expressed
LOC_Os04g42990Os.50619.1.S1_x_at1/114+25213102..25219840Ssl1-like family protein, expressed
LOC_Os04g43010NANA4+25232542..25232865retrotransposon protein, putative, unclassified
LOC_Os04g43020Os.56219.1.A1_at11/114+25236117..25240710protein kinase family protein, putative, expressed
LOC_Os04g43020OsAffx.26438.1.S1_x_at11/114+25236117..25240710protein kinase family protein, putative, expressed
LOC_Os04g43020Os.39431.1.S1_at1/114+25236117..25240710protein kinase family protein, putative, expressed
LOC_Os04g43020Os.39431.1.S1_x_at1/114+25236117..25240710protein kinase family protein, putative, expressed
LOC_Os04g43030OsAffx.26669.1.S1_at11/114+25241151..25249210Lipase family protein, expressed
LOC_Os04g43040Os.19589.1.S1_at11/114+25249577..25252424expressed protein
LOC_Os04g43050Os.27988.1.A1_at11/114+25254997..25262379RNase3 domain containing protein, expressed
LOC_Os04g43050OsAffx.26439.1.S1_x_at10/114+25254997..25262379RNase3 domain containing protein, expressed
LOC_Os04g43060OsAffx.14250.1.S1_at11/114+25273148..25274023enzyme of the cupin superfamily, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26669.1.S1_at--951--1771Chr04:25247660..25247684 (25 bp)
ACCGTGATATCATTCCTACAGTACC
LOC_Os04g43030
OsAffx.26669.1.S1_at--834--6971Chr04:25247680..25247704 (25 bp)
GTACCACGTCTTATGGGCTATTGCC
LOC_Os04g43030
OsAffx.26669.1.S1_at--115--4871Chr04:25247696..25247720 (25 bp)
GCTATTGCCATGTGGAAGCACCAGT
LOC_Os04g43030
OsAffx.26669.1.S1_at--389--6091Chr04:25247930..25247954 (25 bp)
GAGTACACCCCTGATGTTCTTGTCA
LOC_Os04g43030
OsAffx.26669.1.S1_at--921--9091Chr04:25248268..25248292 (25 bp)
TGCTCCGATCAATCAGGGATGGTTC
LOC_Os04g43030
OsAffx.26669.1.S1_at--152--8011Chr04:25248284..25248308 (25 bp)
GGATGGTTCAGCTCTTATGCAGCAC
LOC_Os04g43030
OsAffx.26669.1.S1_at--779--5691Chr04:25248315..25248339 (25 bp)
GACTTTTACTACGTCACACTGCTAG
LOC_Os04g43030
OsAffx.26669.1.S1_at--192--5371Chr04:25248611..25248635 (25 bp)
GAAGACTACCATCAGTTAACCGCCT
LOC_Os04g43030
OsAffx.26669.1.S1_at--397--6771Chr04:25248625..25248649 (25 bp)
GTTAACCGCCTGATCTTAGTACATG
LOC_Os04g43030
OsAffx.26669.1.S1_at--223--7031Chr04:25248643..25248667 (25 bp)
GTACATGCTTGAAACTCCCAAACCT
LOC_Os04g43030
OsAffx.26669.1.S1_at--510--3591Chr04:25249127..25249151 (25 bp)
CATTGCCCTTGGTAGTCAGTTTGTA
LOC_Os04g43030
Target Sequence 
ACCGTGATATCATTCCTACAGTACCACGTCTTATGGGCTATTGCCATGTGGAAGCACCAGTTTATCTTAAATTTGGAGAT
CTAAAAGATGCACTGGTAGATGAGGAGACTATAGATGATGAAGGTGATTCCATAGGGGAGTACACCCCTGATGTTCTTGT
CAGTGAATTTATGAAAGGAGAAAAGCAACTTGTGGAAAAACTACTTCAGACAGAAATAAATTTGCTCCGATCAATCAGGG
ATGGTTCAGCTCTTATGCAGCACATGGAAGACTTTTACTACGTCACACTGCTAGAGAGAGTGAGGTCAAGGTACCAAACA
GGTGACGGTGCAAATGAAGACTACCATCAGTTAACCGCCTGATCTTAGTACATGCTTGAAACTCCCAAACCTGGGTTGCC
TGGCTACTGCCGTTCAGCTTCTTTGGCTGATAGATATCAAGAAACATTGCAAACAATGGAACCTGTGCAGGACCAGTTTA
GGGGTTATGGTCGAACTCGGAAGTAAGAGGACGCATTGCCCTTGGTAGTCAGTTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26669.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis