Browse Element(s) Details


OsAffx.26673.1.S1_at

Description tigr:9633.m00001
TID=OsAffx.26673.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0101011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g00998NANA5+2342..3402retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g01002NANA5+3623..4090hypothetical protein
LOC_Os05g01006OsAffx.8762.1.S1_at1/115+4598..8876retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g01010OsAffx.26673.1.S1_at11/115+12587..14164hypothetical protein
LOC_Os05g01020Os.47430.1.S1_x_at11/115+16675..25049Paired amphipathic helix repeat family protein, expressed
LOC_Os05g01020Os.16909.1.S1_s_at11/115+16675..25049Paired amphipathic helix repeat family protein, expressed
LOC_Os05g01030OsAffx.26674.1.S1_at11/115+38144..43031Phospholipid-transporting ATPase 10, putative, expressed
LOC_Os05g01030Os.52001.1.S1_x_at11/115+38144..43031Phospholipid-transporting ATPase 10, putative, expressed
LOC_Os05g01030Os.52001.1.S2_at4/115+38144..43031Phospholipid-transporting ATPase 10, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26673.1.S1_at--412--1271Chr05:12699..12723 (25 bp)
AGATATCCCTCGTAGCTGCAACAGA
LOC_Os05g01010
OsAffx.26673.1.S1_at--849--5291Chr05:12722..12746 (25 bp)
GAAGTCAAGGTGAGGACCCGTCCTG
LOC_Os05g01010
OsAffx.26673.1.S1_at--986--4451Chr05:12821..12845 (25 bp)
GCCTACGAGCGGATGTTCACAGAGT
LOC_Os05g01010
OsAffx.26673.1.S1_at--826--8891Chr05:12853..12877 (25 bp)
TGAGTGTGACCAAGAGCTCGTCCCT
LOC_Os05g01010
OsAffx.26673.1.S1_at--862--1351Chr05:12903..12927 (25 bp)
AGAGACTGTTGCTGCTGCCCAACAA
LOC_Os05g01010
OsAffx.26673.1.S1_at--839--5051Chr05:12976..13000 (25 bp)
GCAGCAGGTGCTGTATCTGCATCCA
LOC_Os05g01010
OsAffx.26673.1.S1_at--589--3351Chr05:13106..13126 (21 bp)
CACCGTTTCCTTTGTATCCTGAGTA
LOC_Os05g01010
OsAffx.26673.1.S1_at--265--2251Chr05:13153..13177 (25 bp)
AAATACCGTACCAACCAGCATATGC
LOC_Os05g01010
OsAffx.26673.1.S1_at--763--5251Chr05:13196..13220 (25 bp)
GAATGCAAGATCTCGAGACCGCCGT
LOC_Os05g01010
OsAffx.26673.1.S1_at--317--591Chr05:13240..13264 (25 bp)
ATGCCAACCTTACTCTTCTGGAGAC
LOC_Os05g01010
OsAffx.26673.1.S1_at--1141--1611Chr05:13676..13700 (25 bp)
AGCTGGCCATGCTGTTGTCAGGTGT
LOC_Os05g01010
Target Sequence 
AGATATCCCTCGTAGCTGCAACAGAAGTCAAGGTGAGGACCCGTCCTGGAAGGCTCGGATTCAGGTTGTTAAATCCTGAA
CTCATGGATTGCAAGTTCCAAACAAAGGTCAAGCTGGACGAGGCCTACGAGCGGATGTTCACAGAGTGTATGATTGAGTG
TGACCAAGAGCTCGTCCCTCTCGAGGCCCACATCGCCGAGCTGAAGAGACTGTTGCTGCTGCCCAACAACGAGATTGAAG
ATATCGGACCCGATATTATGCAGAGGGGTCGAGGATTGCAGCAGGTGCTGTATCTGCATCCACCGTTTCCTTTGTATCCT
GAGTACGAGTATCATCCTCCTCCGCAACCGCAAATACCGTACCAACCAGCATATGCCACTGCTAAAGAAAGAGAGAATGC
AAGATCTCGAGACCGCCGTGCTCAGAGAGCGTGGTGGCATGCCAACCTTACTCTTCTGGAGACTAAGAAAAAGATCTTGG
AAGGGAAAAGAATAGACCTGGAGAGAGGGCTGAGCAGTATGATCAGTGGCTTGGGAAGCGAAGCTGGCCATGCTGTTGTC
AGGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26673.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis