Browse Element(s) Details


OsAffx.26726.1.S1_at

Description tigr:9633.m00346
TID=OsAffx.26726.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g042007/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04180OsAffx.26725.1.S1_x_at11/115+1863062..1867241Agenet domain containing protein
LOC_Os05g04180Os.16028.1.S1_at11/115+1863062..1867241Agenet domain containing protein
LOC_Os05g04180OsAffx.26725.1.S1_at11/115+1863062..1867241Agenet domain containing protein
LOC_Os05g04190Os.16015.1.S1_a_at11/115+1867875..1873855Auxin-independent growth promoter protein, putative, expressed
LOC_Os05g04200OsAffx.26726.1.S1_at7/115+1877124..1879153hypothetical protein
LOC_Os05g04210OsAffx.14536.1.S1_at11/115+1885939..1887306Cpm7, putative
LOC_Os05g04220Os.52630.1.S1_at11/115+1902299..1905266Nitrogen regulatory protein P-II, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26726.1.S1_at--166--9731Chr05:1879086..1879110 (25 bp)
TCAAGAAAGAGATGCACGAGGTACA
LOC_Os05g04200
OsAffx.26726.1.S1_at--761--6311Chr05:1879076..1879100 (25 bp)
GATGCACGAGGTACATAATGAGATG
LOC_Os05g04200
OsAffx.26726.1.S1_at--835--7651Chr05:1879052..1879076 (25 bp)
GGAAAACGATGTGAGAGGGCCTTAC
LOC_Os05g04200
OsAffx.26726.1.S1_at--283--791Chr05:1879044..1879068 (25 bp)
ATGTGAGAGGGCCTTACAAGGTCAA
LOC_Os05g04200
OsAffx.26726.1.S1_at--647--5971Chr05:1879040..1879064 (25 bp)
GAGAGGGCCTTACAAGGTCAAGAAA
LOC_Os05g04200
OsAffx.26726.1.S1_at--273--5531NONE
GAAAAAGGCCTTACAAGTGCTCCAG
NONE
OsAffx.26726.1.S1_at--258--2311NONE
AAAGGCCTTACAAGTGCTCCAGAAT
NONE
OsAffx.26726.1.S1_at--259--891NONE
AGGCCTTACAAGTGCTCCAGAATCC
NONE
OsAffx.26726.1.S1_at--1134--4431NONE
GCCTTACAAGTGCTCCAGAATCCAA
NONE
OsAffx.26726.1.S1_at--108--4791Chr05:1877384..1877408 (25 bp)
GCTCCAGAATCCAAAGCCATTTGAT
LOC_Os05g04200
OsAffx.26726.1.S1_at--550--2351Chr05:1877372..1877396 (25 bp)
AAAGCCATTTGATGGCAAGCAGGTG
LOC_Os05g04200
Target Sequence 
TCAAGAAAGAGATGCACGAGGTACATAATGAGATGGAAAACGATGTGAGAGGGCCTTACAAGGTCAAGAAAAAGGCCTTA
CAAGTGCTCCAGAATCCAAAGCCATTTGATGGCAAGCAGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26726.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis