Browse Element(s) Details


OsAffx.26788.1.S1_at

Description tigr:9633.m00764
TID=OsAffx.26788.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0862011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08580OsAffx.14592.1.S1_at11/115+4677327..4678451hypothetical protein
LOC_Os05g08590OsAffx.14593.1.S1_at11/115+4680948..4681319hypothetical protein
LOC_Os05g08600Os.10119.1.S1_a_at11/115+4682716..4686676pre-mRNA splicing factor PRP38 family protein, putative, expressed
LOC_Os05g08610Os.49162.1.S1_at11/115+4688614..4693391Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g08620OsAffx.26788.1.S1_at11/115+4700845..4701480expressed protein
LOC_Os05g08640Os.17173.1.S1_at10/115+4713076..4715065Transferase family protein, expressed
LOC_Os05g08640OsAffx.9719.1.S1_x_at2/115+4713076..4715065Transferase family protein, expressed
LOC_Os05g08650OsAffx.25367.1.S1_at1/115+4715340..4717375retrotransposon, putative, centromere-specific
LOC_Os05g08650Os.19099.1.S1_x_at1/115+4715340..4717375retrotransposon, putative, centromere-specific
LOC_Os05g08660Os.46314.1.S1_x_at6/115+4718336..4721254retrotransposon, putative, centromere-specific
LOC_Os05g08660Os.19099.1.S1_x_at2/115+4718336..4721254retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26788.1.S1_at--314--3611Chr05:4700880..4700904 (25 bp)
CTTCTCGACTACTCAATCGGCTTGC
LOC_Os05g08620
OsAffx.26788.1.S1_at--58--9371Chr05:4700884..4700908 (25 bp)
TCGACTACTCAATCGGCTTGCCGGC
LOC_Os05g08620
OsAffx.26788.1.S1_at--499--1851Chr05:4701002..4701026 (25 bp)
ACGACAACGGCGCACGGCCGCTGTC
LOC_Os05g08620
OsAffx.26788.1.S1_at--583--9611Chr05:4701028..4701052 (25 bp)
TCATCGGAGGAGCTCTCGAAGTCGT
LOC_Os05g08620
OsAffx.26788.1.S1_at--301--9091Chr05:4701100..4701124 (25 bp)
TGCTACGCCGTGCTGAAGCAGCAGA
LOC_Os05g08620
OsAffx.26788.1.S1_at--791--9951Chr05:4701103..4701127 (25 bp)
TACGCCGTGCTGAAGCAGCAGAGGA
LOC_Os05g08620
OsAffx.26788.1.S1_at--407--631Chr05:4701160..4701184 (25 bp)
ATGCTCCTCTGCTGGCACGAGCACG
LOC_Os05g08620
OsAffx.26788.1.S1_at--999--1491Chr05:4701179..4701203 (25 bp)
AGCACGACCTGTCGGATTGATCGGT
LOC_Os05g08620
OsAffx.26788.1.S1_at--193--1771Chr05:4701185..4701209 (25 bp)
ACCTGTCGGATTGATCGGTCGAGGC
LOC_Os05g08620
OsAffx.26788.1.S1_at--999--3851Chr05:4701187..4701211 (25 bp)
CTGTCGGATTGATCGGTCGAGGCCC
LOC_Os05g08620
OsAffx.26788.1.S1_at--841--6571Chr05:4701193..4701217 (25 bp)
GATTGATCGGTCGAGGCCCGCCCTG
LOC_Os05g08620
Target Sequence 
CTTCTCGACTACTCAATCGGCTTGCCGGCCGTCCATGGAGCTCGCCGCGATCGCTTCCGCCTCGGCCTCGATCTGCTCGG
CGTACCGCCACCTCTCGGCCACGCCGGCCGATGACAACGGCGACGACAACGGCGCACGGCCGCTGTCCTCATCGGAGGAG
CTCTCGAAGTCGTCGTCGTCGTCGCGGCGGATGGCAAAGCCGGCGGAGCTCCGGCGGCGGTGCTACGCCGTGCTGAAGCA
GCAGAGGACGAGGCTGTACATCCTCCGGCGCTGCGTCTCCATGCTCCTCTGCTGGCACGAGCACGACCTGTCGGATTGAT
CGGTCGAGGCCCGCCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26788.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis