Browse Element(s) Details


OsAffx.26814.1.S1_at

Description tigr:9633.m00917
TID=OsAffx.26814.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1055011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10510OsAffx.4856.1.S1_x_at1/115+5692639..5696390retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g10520NANA5+5696780..5701587retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g10530NANA5+5702407..5705698retrotransposon protein, putative, unclassified
LOC_Os05g10540NANA5+5706328..5712483retrotransposon protein, putative, unclassified
LOC_Os05g10550OsAffx.26814.1.S1_at11/115+5720801..5722058hypothetical protein
LOC_Os05g10560OsAffx.14618.1.S1_x_at11/115+5726656..5727177IQ calmodulin-binding motif family protein, expressed
LOC_Os05g10570Os.35338.1.S1_at11/115+5728909..5730250expressed protein
LOC_Os05g10570Os.50835.1.S1_x_at11/115+5728909..5730250expressed protein
LOC_Os05g10580OsAffx.4294.1.S1_at11/115+5735815..5739914Cullin family protein, expressed
LOC_Os05g10590Os.52472.1.S1_at11/115+5743159..5746733expressed protein
LOC_Os05g10590Os.52472.2.S1_x_at11/115+5743159..5746733expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26814.1.S1_at--865--6431Chr05:5722002..5722026 (25 bp)
GATCATGGACTCATGGTGTCGGCGC
LOC_Os05g10550
OsAffx.26814.1.S1_at--793--8011Chr05:5721961..5721985 (25 bp)
GGAGGAGATTACGGCGTCTATACGC
LOC_Os05g10550
OsAffx.26814.1.S1_at--498--4711Chr05:5721415..5721439 (25 bp)
GCTGGCGCGCTTGAGCTCATGGAAC
LOC_Os05g10550
OsAffx.26814.1.S1_at--662--4571Chr05:5721409..5721433 (25 bp)
GCGCTTGAGCTCATGGAACTCGGTG
LOC_Os05g10550
OsAffx.26814.1.S1_at--728--7891Chr05:5721378..5721402 (25 bp)
GGTTCGTTGGATTCGGCAAGGATCC
LOC_Os05g10550
OsAffx.26814.1.S1_at--550--7931Chr05:5721370..5721394 (25 bp)
GGATTCGGCAAGGATCCAGTCCACC
LOC_Os05g10550
OsAffx.26814.1.S1_at--499--1131Chr05:5721275..5721299 (25 bp)
AGTCCGCCTTTCTCTTATTGGTAGA
LOC_Os05g10550
OsAffx.26814.1.S1_at--1119--1371Chr05:5721248..5721272 (25 bp)
AGACGGAGACGGATACCTCGCCGGC
LOC_Os05g10550
OsAffx.26814.1.S1_at--1061--9951Chr05:5720904..5721216 (25 bp)
TACCGTGTCCCGGTGAGTCAGGGTC
LOC_Os05g10550
OsAffx.26814.1.S1_at--280--1791Chr05:5720859..5720883 (25 bp)
ACCGAGGCCGTGTCGGAATCGGAGA
LOC_Os05g10550
OsAffx.26814.1.S1_at--731--2291Chr05:5720831..5720855 (25 bp)
AAATGTGATCCGAGCGCTGGCTAAC
LOC_Os05g10550
Target Sequence 
GATCATGGACTCATGGTGTCGGCGCGGGCGCTTGAGGACGAGGAGGAGATTACGGCGTCTATACGCAACTGCTCGTGTCG
CGGGTCTTCTCTCCGCCCCGCTTCGCCTGAACACCTCCGCCACCTCCGCCCTCGTCCTTCTCCTCCTCCGGCAAGGGCAC
CAGCGACGGGCTGGCGCGCTTGAGCTCATGGAACTCGGTGGAGACGGGTTCGTTGGATTCGGCAAGGATCCAGTCCACCT
CCTCCTGTGGCAGCAGCCACATCTTCTTCGCCGGAGGATGCTCCTCCTCTGGTCCTCCGTCAACGGCGGAGTCCGCCTTT
CTCTTATTGGTAGAGGAGACGGAGACGGATACCTCGCCGGCCCAGGGTTCCCCAAACCGCCAGGGCCGGGGTTACCGTGT
CCCGGTGAGTCAGGGTCGGAGTCGGGGCTGGTGCGCGACCGAGGCCGTGTCGGAATCGGAGATGAAAATGTGATCCGAGC
GCTGGCTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26814.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis