Browse Element(s) Details


OsAffx.26850.1.S1_x_at

Description tigr:9633.m01088
TID=OsAffx.26850.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AC116600 Putative chalcone synthase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1218011/11Chalcone synthase 8, putative
LOC_Os05g1221011/11Chalcone synthase 8, putative, expressed
LOC_Os05g1224011/11Chalcone synthase 8, putative
LOC_Os05g121904/11Chalcone and stilbene synthases, N-terminal domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12170Os.13459.1.S1_at11/115+6936703..6943504uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os05g12170OsAffx.14653.1.S1_x_at11/115+6936703..6943504uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os05g12180OsAffx.26850.1.S1_x_at11/115+6955158..6957364Chalcone synthase 8, putative
LOC_Os05g12180OsAffx.26850.2.S1_at1/115+6955158..6957364Chalcone synthase 8, putative
LOC_Os05g12190OsAffx.26850.2.S1_at11/115+6961429..6962844Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os05g12190OsAffx.26850.1.S1_x_at4/115+6961429..6962844Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os05g12200OsAffx.14655.1.S1_at10/115+6966368..6967765TNP2, putative
LOC_Os05g12200OsAffx.3348.1.S1_at1/115+6966368..6967765TNP2, putative
LOC_Os05g12210OsAffx.26850.1.S1_x_at11/115+6970651..6972977Chalcone synthase 8, putative, expressed
LOC_Os05g12220OsAffx.4311.1.S1_at11/115+6976937..6977346hypothetical protein
LOC_Os05g12230OsAffx.26851.1.S1_at10/115+6979252..6981442hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009715biological_processchalcone biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0009926biological_processauxin polar transport
GO:0005634cellular_componentnucleus
GO:0005783cellular_componentendoplasmic reticulum
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0016210molecular_functionnaringenin-chalcone synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26850.1.S1_x_at--88--274Chr05:6983934..6983958 (25 bp)
ATATGCTTCTCAAACCCAGATGAAA
LOC_Os05g12240
OsAffx.26850.1.S1_x_at--949--10134Chr05:6983933..6983957 (25 bp)
TATGCTTCTCAAACCCAGATGAAAG
LOC_Os05g12240
OsAffx.26850.1.S1_x_at--385--9513Chr05:6983927..6983951 (25 bp)
TCTCAAACCCAGATGAAAGCAAAAT
LOC_Os05g12240
OsAffx.26850.1.S1_x_at--99--8014Chr05:6983881..6983905 (25 bp)
GGATGGTGCCGGAGCAATCATTGTC
LOC_Os05g12240
OsAffx.26850.1.S1_x_at--630--6254Chr05:6983880..6983904 (25 bp)
GATGGTGCCGGAGCAATCATTGTCG
LOC_Os05g12240
OsAffx.26850.1.S1_x_at--262--7293Chr05:6983876..6983900 (25 bp)
GTGCCGGAGCAATCATTGTCGGCGC
LOC_Os05g12240
OsAffx.26850.1.S1_x_at--402--4493Chr05:6983874..6983898 (25 bp)
GCCGGAGCAATCATTGTCGGCGCTG
LOC_Os05g12240
OsAffx.26850.1.S1_x_at--202--7013Chr05:6983783..6983807 (25 bp)
GTACTGAGCATGCACTTGGCATGCA
LOC_Os05g12240
OsAffx.26850.1.S1_x_at--26--9933Chr05:6983782..6983806 (25 bp)
TACTGAGCATGCACTTGGCATGCAG
LOC_Os05g12240
OsAffx.26850.1.S1_x_at--279--4993Chr05:6983776..6983800 (25 bp)
GCATGCACTTGGCATGCAGACCACC
LOC_Os05g12240
OsAffx.26850.1.S1_x_at--309--2193Chr05:6983675..6983699 (25 bp)
ACACATTCCGATCGGTTGGAAACAT
LOC_Os05g12240
Target Sequence 
ATATGCTTCTCAAACCCAGATGAAAGCAAAATNGTCGGCCATGGACTNTTTGGGGATGGTGCCGGAGCAATCATTGTCGG
CGCTGNCCCANTGGTCGATGNAGANCGCCCNCTNTTNGAGATGGTCCTNGCCTCGCAAACAACGATACCANGTACTGAGC
ATGCACTTGGCATGCAGACCACCNNCANNGGCATAGATTTCCACCTCTCTATCCAGGTGCCNANNCTNATCAAGGACAAC
ATCCGNCANTGCTTGCTNNACACATTCCGATCGGTTGGAAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26850.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis