Browse Element(s) Details


OsAffx.4311.1.S1_at

Description tigr:9633.m01089
TID=OsAffx.4311.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1222011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12180OsAffx.26850.1.S1_x_at11/115+6955158..6957364Chalcone synthase 8, putative
LOC_Os05g12180OsAffx.26850.2.S1_at1/115+6955158..6957364Chalcone synthase 8, putative
LOC_Os05g12190OsAffx.26850.2.S1_at11/115+6961429..6962844Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os05g12190OsAffx.26850.1.S1_x_at4/115+6961429..6962844Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os05g12200OsAffx.14655.1.S1_at10/115+6966368..6967765TNP2, putative
LOC_Os05g12200OsAffx.3348.1.S1_at1/115+6966368..6967765TNP2, putative
LOC_Os05g12210OsAffx.26850.1.S1_x_at11/115+6970651..6972977Chalcone synthase 8, putative, expressed
LOC_Os05g12220OsAffx.4311.1.S1_at11/115+6976937..6977346hypothetical protein
LOC_Os05g12230OsAffx.26851.1.S1_at10/115+6979252..6981442hypothetical protein
LOC_Os05g12240OsAffx.26850.1.S1_x_at11/115+6983383..6984769Chalcone synthase 8, putative
LOC_Os05g12240Os.36437.1.S1_at1/115+6983383..6984769Chalcone synthase 8, putative
LOC_Os05g12250OsAffx.26852.1.S1_at11/115+6991999..6992671hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4311.1.S1_at--756--651Chr05:6977292..6977316 (25 bp)
ATGAATTTGCTTAGGGACACTCAAA
LOC_Os05g12220
OsAffx.4311.1.S1_at--669--7631Chr05:6977205..6977229 (25 bp)
GGGAGAATTTTCACAACATGGGAGA
LOC_Os05g12220
OsAffx.4311.1.S1_at--442--6051Chr05:6977184..6977208 (25 bp)
GAGATTTGCCCCTAGGACCAATTAG
LOC_Os05g12220
OsAffx.4311.1.S1_at--1112--9532Chr09:6229616..6229815 (25 bp)
TCTTTACAAATCAAGTCCCTGGTGC
NONE
OsAffx.4311.1.S1_at--161--6131Chr05:6977110..6977134 (25 bp)
GAGTGGAGCCCGTGTGTCATTGTCT
LOC_Os05g12220
OsAffx.4311.1.S1_at--25--4551Chr05:6977103..6977127 (25 bp)
GCCCGTGTGTCATTGTCTCGAGGAG
LOC_Os05g12220
OsAffx.4311.1.S1_at--999--1351Chr05:6977074..6977098 (25 bp)
AGAGCAGTAGCTGAGGCAGAGCCTT
LOC_Os05g12220
OsAffx.4311.1.S1_at--686--931Chr05:6977061..6977085 (25 bp)
AGGCAGAGCCTTGCCGGCTGGCACT
LOC_Os05g12220
OsAffx.4311.1.S1_at--47--3351Chr05:6977032..6977056 (25 bp)
CACGGCGACGCTGACAGTGAATGGC
LOC_Os05g12220
OsAffx.4311.1.S1_at--698--1111Chr05:6977017..6977041 (25 bp)
AGTGAATGGCAGCTCCTTGGACGAT
LOC_Os05g12220
OsAffx.4311.1.S1_at--795--2791Chr05:6976977..6977001 (25 bp)
AAGATGTGCAGGCTTCTTGCGAACC
LOC_Os05g12220
Target Sequence 
ATGAATTTGCTTAGGGACACTCAAAAAATGTGGGAGAATTTTCACAACATGGGAGATTTGCCCCTAGGACCAATTAGTAC
AAAGAGTTTTGTTTTCTTTACAAATCAAGTCCCTGGTGCTTTGATGGAGTGGAGCCCGTGTGTCATTGTCTCGAGGAGGG
AGAGAGCAGTAGCTGAGGCAGAGCCTTGCCGGCTGGCACTCCTTCACGGCGACGCTGACAGTGAATGGCAGCTCCTTGGA
CGATGCGGCCAAATAGAGAAAGATGTGCAGGCTTCTTGCGAACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4311.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis