Browse Element(s) Details


Os.36437.1.S1_at

Description gb:AK063406.1
DB_XREF= gi:32973424
TID=Os.36437.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36437 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1773_H01.21 (OJ1773_H01.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-A08, full insert sequence.
FL= gb:AK063406.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3792011/11NAM, putative, expressed
LOC_Os05g122401/11Chalcone synthase 8, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37890Os.11587.2.S1_x_at10/117+22724502..22729495protein phosphatase 2C family protein, putative, expressed
LOC_Os07g37890Os.11587.2.S1_at9/117+22724502..22729495protein phosphatase 2C family protein, putative, expressed
LOC_Os07g37890Os.11587.1.S1_at8/117+22724502..22729495protein phosphatase 2C family protein, putative, expressed
LOC_Os07g37890Os.21837.1.S1_at1/117+22724502..22729495protein phosphatase 2C family protein, putative, expressed
LOC_Os07g37900NANA7+22736413..22744662retrotransposon protein, putative, unclassified
LOC_Os07g37910OsAffx.10252.1.S1_at10/117+22746738..22748972hypothetical protein
LOC_Os07g37920Os.36437.1.S1_at11/117+22753723..22755997NAM, putative, expressed
LOC_Os07g37930OsAffx.16603.1.S1_at11/117+22758973..22760328hypothetical protein
LOC_Os07g37940NANA7+22764427..22766233hypothetical protein
LOC_Os07g37950Os.30337.1.S1_at11/117+22772455..22773493disease resistance protein, putative, expressed
LOC_Os07g37960OsAffx.22483.1.S1_at11/117+22778414..22781911exostosin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009715biological_processchalcone biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0009825biological_processmultidimensional cell growth
GO:0009908biological_processflower development
GO:0009926biological_processauxin polar transport
GO:0005634cellular_componentnucleus
GO:0005783cellular_componentendoplasmic reticulum
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0003700molecular_functiontranscription factor activity
GO:0016210molecular_functionnaringenin-chalcone synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36437.1.S1_at--568--9391Chr07:22754244..22754268 (25 bp)
TCGTTGCCATCGGAGTCAGCAGCAG
LOC_Os07g37920
Os.36437.1.S1_at--906--4031Chr07:22754192..22754216 (25 bp)
CGTTCCAACTCTCCAGGGTGAATTG
LOC_Os07g37920
Os.36437.1.S1_at--416--7791Chr07:22754151..22754175 (25 bp)
GGTGCCGGCATTATGCATACACATA
LOC_Os07g37920
Os.36437.1.S1_at--54--4971Chr07:22754117..22754141 (25 bp)
GCATACATGCATGGCTTTTCAAGTA
LOC_Os07g37920
Os.36437.1.S1_at--959--8651Chr07:22754058..22754082 (25 bp)
TGTGTGTGGCAGTCGCATTCAGTGA
LOC_Os07g37920
Os.36437.1.S1_at--1147--231Chr07:22753984..22754008 (25 bp)
ATATATGGCCGCATTGCTCCTAGGG
LOC_Os07g37920
Os.36437.1.S1_at--1038--7371Chr07:22753935..22753959 (25 bp)
GTGACCTAACCAGCTAGATCATGTT
LOC_Os07g37920
Os.36437.1.S1_at--1111--2651Chr07:22753895..22753919 (25 bp)
AAGCCGCATGCAAACACGTAGATCA
LOC_Os07g37920
Os.36437.1.S1_at--686--6431Chr07:22753875..22753899 (25 bp)
GATCATATGGCTTTGCCTTCACATG
LOC_Os07g37920
Os.36437.1.S1_at--889--7411Chr07:22753792..22753816 (25 bp)
GTGTTAGCTTCATGCGTTTGTACCA
LOC_Os07g37920
Os.36437.1.S1_at--1026--1232Chr07:22753742..22753766 (25 bp)
AGTTGCACTGTTCATCATTATCCCA
LOC_Os07g37920
Target Sequence 
TCGTTGCCATCGGAGTCAGCAGCAGCAGCAGCCGCCTGCAATTTCCAGCATCCGTTCCAACTCTCCAGGGTGAATTGGGA
TTCCTGAATAAAAGGTGCCGGCATTATGCATACACATATATGCACATGCATACATGCATGGCTTTTCAAGTAGTAGCACA
ACATTACTAGTAATTAATCACACTAATGTGTGTGGCAGTCGCATTCAGTGAGCACTGATCGAGTAGTTGCATGAACACAA
CACTAATGCATGCACTACATATATATGGCCGCATTGCTCCTAGGGCACGTACCTGTACGAACTAGGTAAGTGACCTAACC
AGCTAGATCATGTTCAGAATAAGGAGAAGAAGCCGCATGCAAACACGTAGATCATATGGCTTTGCCTTCACATGCGTTTG
CATCATATATATCGCATTCAGAAAGTAGTGCTGCAGCTAACACATAGATATGGTGTTAGCTTCATGCGTTTGTACCATAT
ATAGCGGATGCAGAAAGTAGCTAGTTGCACTGTTCATCATTATCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36437.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis