Browse Element(s) Details


OsAffx.22483.1.S1_at

Description gb:NM_186358.1
DB_XREF= gi:34899801
GEN=OJ1092_A07.9
TID=OsAffx.22483.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1092_A07.9 (OJ1092_A07.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3796011/11exostosin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37920Os.36437.1.S1_at11/117+22753723..22755997NAM, putative, expressed
LOC_Os07g37930OsAffx.16603.1.S1_at11/117+22758973..22760328hypothetical protein
LOC_Os07g37940NANA7+22764427..22766233hypothetical protein
LOC_Os07g37950Os.30337.1.S1_at11/117+22772455..22773493disease resistance protein, putative, expressed
LOC_Os07g37960OsAffx.22483.1.S1_at11/117+22778414..22781911exostosin family protein, putative, expressed
LOC_Os07g37970OsAffx.16605.1.S1_at11/117+22783473..22785671Cytochrome P450 51, putative
LOC_Os07g37980OsAffx.28806.1.S1_at11/117+22787237..22789492Cytochrome P450 51, putative
LOC_Os07g37990Os.10954.1.S1_at11/117+22790068..22796708Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os07g37990Os.18186.1.S1_at1/117+22790068..22796708Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os07g38000Os.37602.2.S1_x_at11/117+22797160..22798498Cytochrome c family protein, expressed
LOC_Os07g38000Os.37602.1.S1_at11/117+22797160..22798498Cytochrome c family protein, expressed
LOC_Os07g38010NANA7+22800855..22801187hypothetical protein
LOC_Os07g38020OsAffx.16606.1.A1_at3/117+22803962..22804693hypothetical protein
LOC_Os07g38030Os.37032.1.S1_a_at11/117+22806023..22807670GRAS family transcription factor containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22483.1.S1_at--406--8431Chr07:22779180..22779204 (25 bp)
GGCCTTCATTGCTATTCTTCATGGG
LOC_Os07g37960
OsAffx.22483.1.S1_at--608--10551Chr07:22779194..22779218 (25 bp)
TTCTTCATGGGCAACCGGTATCGAA
LOC_Os07g37960
OsAffx.22483.1.S1_at--654--5271Chr07:22781088..22781112 (25 bp)
GAATGCACTCATCCAAATTCTGCCT
LOC_Os07g37960
OsAffx.22483.1.S1_at--1023--3431Chr07:22781143..22781167 (25 bp)
CAGATTGTTTGATGCGCTTGTCAGT
LOC_Os07g37960
OsAffx.22483.1.S1_at--763--9151Chr07:22781155..22781179 (25 bp)
TGCGCTTGTCAGTTTATGTGTTCCT
LOC_Os07g37960
OsAffx.22483.1.S1_at--83--6711Chr07:22781174..22781198 (25 bp)
GTTCCTGTTATAGTCAGCGATTACA
LOC_Os07g37960
OsAffx.22483.1.S1_at--345--8331Chr07:22781263..22781287 (25 bp)
GGCTGTACAGCCTGGATTTTTAACA
LOC_Os07g37960
OsAffx.22483.1.S1_at--639--2471Chr07:22781290..22781314 (25 bp)
AACACTTCGAGGAATCAGTTCACAG
LOC_Os07g37960
OsAffx.22483.1.S1_at--362--831Chr07:22781776..22781800 (25 bp)
ATGGCACCAAGTTTCTTCAAAGGCA
LOC_Os07g37960
OsAffx.22483.1.S1_at--767--2931Chr07:22781795..22781819 (25 bp)
AAGGCACCATTGATCAAGCTGTTGA
LOC_Os07g37960
OsAffx.22483.1.S1_at--131--6551Chr07:22781818..22781842 (25 bp)
GATTAACCGCGATAAACGCCTAGTT
LOC_Os07g37960
Target Sequence 
GGCCTTCATTGCTATTCTTCATGGGCAACCGGTATCGAAAGGAGGNNNNNNNNNTNNNTNNTNNGNNNNNTNNNNTNNNT
NNAAATGAGGCAGATGTAATCATAAAACATGGAGCCCAGTCAAGGGAGAGTAGGCGTATGGCTACACGAGGAATGCACTC
ATCCAAATTCTGCCTCCATCCTGCTGGAGATACTCCCTCGGCATGCAGATTGTTTGATGCGCTTGTCAGTTTATGTGTTC
CTGTTATAGTCAGCGATTACATTGAATTACCATTTGAAGATGTTATAGATTACAGAAACATATCAATATTTGTTGAGACA
AGCAAGGCTGTACAGCCTGGATTTTTAACATCAACACTTCGAGGAATCAGTTCACAGAGGATTCTAGAGTACCAGAGAGA
AATAAAAAAGGTAAAACATTATTTTGAGTATGAAGATCCAAACGGACCAGTGAATCAGATATGGCACCAAGTTTCTTCAA
AGGCACCATTGATCAAGCTGTTGATTAACCGCGATAAACGCCTAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22483.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis