Browse Element(s) Details


Os.30337.1.S1_at

Description gb:AK108970.1
DB_XREF= gi:32994179
TID=Os.30337.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30337 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1773_H01.25 (OJ1773_H01.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-153-D12, full insert sequence.
FL= gb:AK108970.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3795011/11disease resistance protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37910OsAffx.10252.1.S1_at10/117+22746738..22748972hypothetical protein
LOC_Os07g37920Os.36437.1.S1_at11/117+22753723..22755997NAM, putative, expressed
LOC_Os07g37930OsAffx.16603.1.S1_at11/117+22758973..22760328hypothetical protein
LOC_Os07g37940NANA7+22764427..22766233hypothetical protein
LOC_Os07g37950Os.30337.1.S1_at11/117+22772455..22773493disease resistance protein, putative, expressed
LOC_Os07g37960OsAffx.22483.1.S1_at11/117+22778414..22781911exostosin family protein, putative, expressed
LOC_Os07g37970OsAffx.16605.1.S1_at11/117+22783473..22785671Cytochrome P450 51, putative
LOC_Os07g37980OsAffx.28806.1.S1_at11/117+22787237..22789492Cytochrome P450 51, putative
LOC_Os07g37990Os.10954.1.S1_at11/117+22790068..22796708Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os07g37990Os.18186.1.S1_at1/117+22790068..22796708Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os07g38000Os.37602.2.S1_x_at11/117+22797160..22798498Cytochrome c family protein, expressed
LOC_Os07g38000Os.37602.1.S1_at11/117+22797160..22798498Cytochrome c family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30337.1.S1_at--686--2011Chr07:22772850..22772874 (25 bp)
ACTACTGCGACTCCGAGTATTGCCT
LOC_Os07g37950
Os.30337.1.S1_at--843--9931Chr07:22772647..22772671 (25 bp)
TACGACACAGCCACAGGGTAGGTTT
LOC_Os07g37950
Os.30337.1.S1_at--961--7671Chr07:22772632..22772656 (25 bp)
GGGTAGGTTTAAAATGCTGCAGCCA
LOC_Os07g37950
Os.30337.1.S1_at--266--2291Chr07:22772621..22772645 (25 bp)
AAATGCTGCAGCCATTTGGCGCCAT
LOC_Os07g37950
Os.30337.1.S1_at--240--8411Chr07:22772604..22772628 (25 bp)
GGCGCCATTATATTCTCATACTTAG
LOC_Os07g37950
Os.30337.1.S1_at--347--10011Chr07:22772579..22772603 (25 bp)
TAGCTAAGCTCGGTTAGCTTCTCGT
LOC_Os07g37950
Os.30337.1.S1_at--73--7891Chr07:22772568..22772592 (25 bp)
GGTTAGCTTCTCGTTTGATCGCAAC
LOC_Os07g37950
Os.30337.1.S1_at--1140--8831Chr07:22772553..22772577 (25 bp)
TGATCGCAACTGACGCATTTGTAAT
LOC_Os07g37950
Os.30337.1.S1_at--824--7751Chr07:22772528..22772552 (25 bp)
GGTGATCTGCCTCTACAGAGATCTT
LOC_Os07g37950
Os.30337.1.S1_at--520--2131Chr07:22772514..22772538 (25 bp)
ACAGAGATCTTGCAGAGCTCGTAAC
LOC_Os07g37950
Os.30337.1.S1_at--554--5611Chr07:22772458..22772482 (25 bp)
GACAAGCATGAGGTCACGCAAGGAA
LOC_Os07g37950
Target Sequence 
ACTACTGCGACTCCGAGTATTGCCTCCGCGAGCTCGCCCTCCTCGTCGAGTCACGGAAAAAGATCATCCCGGTGTTTTAC
AACATCAAACCCTCGGATCTCGTCCTCCCGCAGGCCGTCGTCGAGTCCGTCGCTCACCATCCCCGCGACATTGAACGCTT
CAAATTCGCGCTACGCGAGGTCAAGAACACAGTCGGCCTCACCTACGACACAGCCACAGGGTAGGTTTAAAATGCTGCAG
CCATTTGGCGCCATTATATTCTCATACTTAGTAGCTAAGCTCGGTTAGCTTCTCGTTTGATCGCAACTGACGCATTTGTA
ATGGTGATCTGCCTCTACAGAGATCTTGCAGAGCTCGTAACATCGGCGGCTACCGCAGTTTTGGAGAACATAGACAAGCA
TGAGGTCACGCAAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30337.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis