Browse Element(s) Details


OsAffx.10252.1.S1_at

Description tigr:9635.m03769
TID=OsAffx.10252.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3791010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37890Os.11587.2.S1_x_at10/117+22724502..22729495protein phosphatase 2C family protein, putative, expressed
LOC_Os07g37890Os.11587.2.S1_at9/117+22724502..22729495protein phosphatase 2C family protein, putative, expressed
LOC_Os07g37890Os.11587.1.S1_at8/117+22724502..22729495protein phosphatase 2C family protein, putative, expressed
LOC_Os07g37890Os.21837.1.S1_at1/117+22724502..22729495protein phosphatase 2C family protein, putative, expressed
LOC_Os07g37900NANA7+22736413..22744662retrotransposon protein, putative, unclassified
LOC_Os07g37910OsAffx.10252.1.S1_at10/117+22746738..22748972hypothetical protein
LOC_Os07g37920Os.36437.1.S1_at11/117+22753723..22755997NAM, putative, expressed
LOC_Os07g37930OsAffx.16603.1.S1_at11/117+22758973..22760328hypothetical protein
LOC_Os07g37940NANA7+22764427..22766233hypothetical protein
LOC_Os07g37950Os.30337.1.S1_at11/117+22772455..22773493disease resistance protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10252.1.S1_at--73--5351Chr07:22748872..22748896 (25 bp)
GAAGAGGGCAAACAACGCCTCGGTA
LOC_Os07g37910
OsAffx.10252.1.S1_at--966--2591Chr07:22748859..22748883 (25 bp)
AACGCCTCGGTACCATACTAGGCAA
LOC_Os07g37910
OsAffx.10252.1.S1_at--926--9891Chr07:22748844..22748868 (25 bp)
TACTAGGCAATTCGGCTGTGATGGT
LOC_Os07g37910
OsAffx.10252.1.S1_at--664--811NONE
ATGGTGTGAGGCATCGCGCAGCAAC
NONE
OsAffx.10252.1.S1_at--1134--3531Chr07:22747235..22747259 (25 bp)
CATCGCGCAGCAACAACGCATTGGG
LOC_Os07g37910
OsAffx.10252.1.S1_at--81--6311Chr07:22747088..22747112 (25 bp)
GATGAGGCAGCCAACTACGCATGGG
LOC_Os07g37910
OsAffx.10252.1.S1_at--973--391Chr07:22747054..22747078 (25 bp)
ATCAGCCGGCCGTGCGCAAGGAAGA
LOC_Os07g37910
OsAffx.10252.1.S1_at--81--471Chr07:22747001..22747025 (25 bp)
ATCTCGTCGGCCTACCAAGCGCGGG
LOC_Os07g37910
OsAffx.10252.1.S1_at--992--7591Chr07:22746973..22746997 (25 bp)
GGGCACTTCAGCATGGTGGCCACAC
LOC_Os07g37910
OsAffx.10252.1.S1_at--21--7731Chr07:22746959..22746983 (25 bp)
GGTGGCCACACAGGGAAATTCGTCG
LOC_Os07g37910
OsAffx.10252.1.S1_at--763--5591Chr07:22746945..22746969 (25 bp)
GAAATTCGTCGATCTTCCACGTCGG
LOC_Os07g37910
Target Sequence 
GAAGAGGGCAAACAACGCCTCGGTACCATACTAGGCAATTCGGCTGTGATGGTGTGAGGCATCGCGCAGCAACAACGCAT
TGGGGAGGAGCTCGTCGGCTGGCCGCGTTGCGCCGCACGCGGGGGAGCAGCCTGGCTCGAGCACGCAAAGGAGGCGGGAG
GGCGTCGGGGCATCGTCTGAGAGGGGGGAAGAGGGGGGTCGTGGAGGATGAGGCAGCCAACTACGCATGGGGAGGTGGTC
ATCAGCCGGCCGTGCGCAAGGAAGAGCTCGTCCACCGGCCGCCCGCAGGGAGGATCTCGTCGGCCTACCAAGCGCGGGGA
GGGGCACTTCAGCATGGTGGCCACACAGGGAAATTCGTCGATCTTCCACGTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10252.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis