Browse Element(s) Details


Os.11587.2.S1_x_at

Description gb:NM_186350.1
DB_XREF= gi:34899785
GEN=OJ1773_H01.18
TID=Os.11587.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.11587 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative protein phosphatase 2C (OJ1773_H01.18), mRNA.
PROD=putative protein phosphatase 2C
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3789010/11protein phosphatase 2C family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37860OsAffx.20387.1.S1_x_at1/117+22702460..22708298retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g37870Os.53479.1.S1_x_at2/117+22709396..22712444hypothetical protein
LOC_Os07g37870OsAffx.31069.2.S1_x_at1/117+22709396..22712444hypothetical protein
LOC_Os07g37870Os.25754.2.S1_x_at1/117+22709396..22712444hypothetical protein
LOC_Os07g37870OsAffx.17106.1.S1_x_at1/117+22709396..22712444hypothetical protein
LOC_Os07g37880NANA7+22716434..22716655hypothetical protein
LOC_Os07g37890Os.11587.2.S1_x_at10/117+22724502..22729495protein phosphatase 2C family protein, putative, expressed
LOC_Os07g37890Os.11587.2.S1_at9/117+22724502..22729495protein phosphatase 2C family protein, putative, expressed
LOC_Os07g37890Os.11587.1.S1_at8/117+22724502..22729495protein phosphatase 2C family protein, putative, expressed
LOC_Os07g37890Os.21837.1.S1_at1/117+22724502..22729495protein phosphatase 2C family protein, putative, expressed
LOC_Os07g37900NANA7+22736413..22744662retrotransposon protein, putative, unclassified
LOC_Os07g37910OsAffx.10252.1.S1_at10/117+22746738..22748972hypothetical protein
LOC_Os07g37920Os.36437.1.S1_at11/117+22753723..22755997NAM, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11587.2.S1_x_at--655--2911Chr07:22727996..22728020 (25 bp)
AAGGACCAGTTCGTCATTCTTGCAT
LOC_Os07g37890
Os.11587.2.S1_x_at--2--3631NONE
CTTGCATCGGATGGGTTCTTACTGA
NONE
Os.11587.2.S1_x_at--637--3851Chr07:22725509..22725533 (25 bp)
CTGAAGTTACACAAGCTATGCACAT
LOC_Os07g37890
Os.11587.2.S1_x_at--707--10131Chr07:22725493..22725517 (25 bp)
TATGCACATACTTGGCTGCCTTTGT
LOC_Os07g37890
Os.11587.2.S1_x_at--540--8331Chr07:22725480..22725504 (25 bp)
GGCTGCCTTTGTAGAGTTTGCACTA
LOC_Os07g37890
Os.11587.2.S1_x_at--456--2451Chr07:22725452..22725476 (25 bp)
AAAATCTTGCAGGTATGGGATGTCC
LOC_Os07g37890
Os.11587.2.S1_x_at--247--4751Chr07:22725413..22725437 (25 bp)
GCTGTTGATATAGTGTCCGCGTCCC
LOC_Os07g37890
Os.11587.2.S1_x_at--837--2431Chr07:22725369..22725393 (25 bp)
AAAATCCCTTGTTGAGGCAGCCACT
LOC_Os07g37890
Os.11587.2.S1_x_at--389--731Chr07:22725307..22725331 (25 bp)
ATGATTGCGCGGTTGTTTGCTTATA
LOC_Os07g37890
Os.11587.2.S1_x_at--419--8951Chr07:22725255..22725279 (25 bp)
TGACTCAACTGCCTCATTGGACAAC
LOC_Os07g37890
Os.11587.2.S1_x_at--339--7691Chr07:22725043..22725067 (25 bp)
GGGTAAACTCACTTGTTCAGCTTCC
LOC_Os07g37890
Target Sequence 
AAGGACCAGTTCGTCATTCTTGCATCGGATGGGTTCTTACTGAAGTTACACAAGCTATGCACATACTTGGCTGCCTTTGT
AGAGTTTGCACTAACAAAAATCTTGCAGGTATGGGATGTCCTCAGCAATCAAGAGGCTGTTGATATAGTGTCCGCGTCCC
CAAGCAGATCAAAGGCTGCAAAATCCCTTGTTGAGGCAGCCACTCGTGAATGGAAAACCAAATATCCAACATCCAAAATC
GATGATTGCGCGGTTGTTTGCTTATATTTGGATGGAAAAATGGACCATGAGCGTGACTCAACTGCCTCATTGGACAACAT
CAGTATTGAAGAGGGTTCAGTTGCAGATCCTAATGAACCTCAGGAGCAGGAGCCCACCTTAACTCGGAATTTCACAGTTA
GGACAGTTGCAGGCAGCACGCAAGAGAAGACCTTAGCAGGGGTGGATGCGAGGATTGCTGGTGTAGCGAACGACCAAAAT
TGGTCAGGTCTCGATGGAGTGACACGGGTAAACTCACTTGTTCAGCTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11587.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis