Browse Element(s) Details


Os.11587.1.S1_at

Description gb:AK069418.1
DB_XREF= gi:32979442
TID=Os.11587.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11587 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative protein phosphatase 2C (OJ1773_H01.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023020C19, full insert sequence.
FL= gb:AK070426.1 gb:AK069418.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g378908/11protein phosphatase 2C family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37860OsAffx.20387.1.S1_x_at1/117+22702460..22708298retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g37870Os.53479.1.S1_x_at2/117+22709396..22712444hypothetical protein
LOC_Os07g37870OsAffx.31069.2.S1_x_at1/117+22709396..22712444hypothetical protein
LOC_Os07g37870Os.25754.2.S1_x_at1/117+22709396..22712444hypothetical protein
LOC_Os07g37870OsAffx.17106.1.S1_x_at1/117+22709396..22712444hypothetical protein
LOC_Os07g37880NANA7+22716434..22716655hypothetical protein
LOC_Os07g37890Os.11587.2.S1_x_at10/117+22724502..22729495protein phosphatase 2C family protein, putative, expressed
LOC_Os07g37890Os.11587.2.S1_at9/117+22724502..22729495protein phosphatase 2C family protein, putative, expressed
LOC_Os07g37890Os.11587.1.S1_at8/117+22724502..22729495protein phosphatase 2C family protein, putative, expressed
LOC_Os07g37890Os.21837.1.S1_at1/117+22724502..22729495protein phosphatase 2C family protein, putative, expressed
LOC_Os07g37900NANA7+22736413..22744662retrotransposon protein, putative, unclassified
LOC_Os07g37910OsAffx.10252.1.S1_at10/117+22746738..22748972hypothetical protein
LOC_Os07g37920Os.36437.1.S1_at11/117+22753723..22755997NAM, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11587.1.S1_at--366--2551Chr07:22724765..22724789 (25 bp)
AACTCCATACCTCGAAGATGAAGCA
LOC_Os07g37890
Os.11587.1.S1_at--304--5011Chr07:22724733..22724757 (25 bp)
GCAGGCCATTGCTCCAAATCTGCAA
LOC_Os07g37890
Os.11587.1.S1_at--845--1391Chr07:22724684..22724708 (25 bp)
AGACGACGCCAAACACAGTGGCTAA
LOC_Os07g37890
Os.11587.1.S1_at--424--4351Chr07:22724645..22724669 (25 bp)
CCAGTCACCCCTGGGATGATATTGT
LOC_Os07g37890
Os.11587.1.S1_at--676--8691Chr07:22724623..22724647 (25 bp)
TGTCGGGTGACCTGTAAATTCTCCA
LOC_Os07g37890
Os.11587.1.S1_at--613--1351Chr07:22724576..22724600 (25 bp)
AGAGAGGTGATGTCCAGACCATTTT
LOC_Os07g37890
Os.11587.1.S1_at--48--4991Chr07:22724544..22724568 (25 bp)
GCATGCTTAGCTTTTGTTGACACAG
LOC_Os07g37890
Os.11587.1.S1_at--1009--2171Chr07:22724525..22724549 (25 bp)
ACACAGGGCGGTGCGCTCTGTCGAT
LOC_Os07g37890
Os.11587.1.S1_at--224--3631Chr07:22724452..22724476 (25 bp)
CTTGCTTTTACTCTCCTGGAGCCAT
NONE
Os.11587.1.S1_at--126--2971Chr07:22724412..22724436 (25 bp)
AATGGCAGTCTCAATACTTTTAGGC
NONE
Os.11587.1.S1_at--903--10351NONE
TTTTTGGTCCATTAAACGATCATTC
NONE
Target Sequence 
AACTCCATACCTCGAAGATGAAGCACAAAAGAGCAGGCCATTGCTCCAAATCTGCAATTTTGCTGGGTTAAAACNAACAA
AAGACGACGCCAAACACAGTGGCTAAACGCACGCCAGGCCCCAGTCACCCCTGGGATGATATTGTCGGGTGACCTGTAAA
TTCTCCACCGGCGCTTGCTTTGCTTTTGTAGAGAGGTGATGTCCAGACCATTTTNTCCGCTGCATGCTTAGCTTTTGTTG
ACACAGGGCGGTGCGCTCTGTCGATGTCGGATTGCCNATCTTTGCCCCCTTTGTTTTGTTCNCGNTCTGTGCCCTTGCTT
TTACTCTCCTGGAGCCATCATNCCACCGAGAAAAATGGCAGTCTCAATACTTTTAGGCCCCCTTTCATTCAAAGGGAATT
CATAGAAATTTTAGAGNATTTTATTTCTATAGGAATTTTTTCTACAANGCCCTTTGAATGAAAGAAATGAACCCTATGGA
ATCCTATGAAATTTNTANNNNNTTTTAACANGAGGTANAACCTCATGGAAAAAATCCTTTGAGTCTTTATCTCTCCTTAA
ATTCCTGTGTTTTTTTGGTCCATTAAACGATCATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11587.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis