Browse Element(s) Details


OsAffx.26869.1.S1_at

Description tigr:9633.m01185
TID=OsAffx.26869.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1368010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g13630Os.52857.1.S1_at11/115+7537387..7538520RNA recognition motif family protein, expressed
LOC_Os05g13640NANA5+7539030..7539443hypothetical protein
LOC_Os05g13650Os.52857.1.S1_at1/115+7541950..7542710RNA recognition motif family protein
LOC_Os05g13660OsAffx.14674.1.S1_at11/115+7545695..7546972hypothetical protein
LOC_Os05g13670OsAffx.26868.1.S1_at11/115+7551512..7552506hypothetical protein
LOC_Os05g13680OsAffx.26869.1.S1_at10/115+7559810..7561315hypothetical protein
LOC_Os05g13690OsAffx.26870.1.S1_at11/115+7565694..7566083hypothetical protein
LOC_Os05g13700OsAffx.1272.1.S1_at1/115+7571209..7574546retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13700OsAffx.29419.3.S1_at1/115+7571209..7574546retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13710OsAffx.20387.1.S1_x_at1/115+7574799..7576088transposon protein, putative, unclassified
LOC_Os05g13720NANA5+7578750..7579889retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13730Os.40360.1.S1_at5/115+7582697..7588472Zinc knuckle family protein
LOC_Os05g13730Os.40855.5.S1_x_at4/115+7582697..7588472Zinc knuckle family protein
LOC_Os05g13730Os.40360.1.S1_x_at3/115+7582697..7588472Zinc knuckle family protein
LOC_Os05g13730Os.2358.1.S1_at2/115+7582697..7588472Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26869.1.S1_at--283--7711Chr05:7559862..7559886 (25 bp)
GGGTGCTCCACATCGTAGAGACCGC
LOC_Os05g13680
OsAffx.26869.1.S1_at--134--1391Chr05:7559880..7559904 (25 bp)
AGACCGCCGGGTTGTTCGACATGGT
LOC_Os05g13680
OsAffx.26869.1.S1_at--789--10791Chr05:7559891..7559915 (25 bp)
TTGTTCGACATGGTGGTGCCTCTTC
LOC_Os05g13680
OsAffx.26869.1.S1_at--215--8611Chr05:7559904..7559928 (25 bp)
TGGTGCCTCTTCTCGAGCAGGCCGA
LOC_Os05g13680
OsAffx.26869.1.S1_at--206--7791Chr05:7559984..7560008 (25 bp)
GGTGCTGTTTGTTCTTGCATTTGCA
LOC_Os05g13680
OsAffx.26869.1.S1_at--466--10271NONE
TTTGCATTAGCAGGCGACGCGATAT
NONE
OsAffx.26869.1.S1_at--474--8251Chr05:7561122..7561146 (25 bp)
GGCAGCGCGGGAAATCCGACTCCTT
LOC_Os05g13680
OsAffx.26869.1.S1_at--819--8151Chr05:7561131..7561155 (25 bp)
GGAAATCCGACTCCTTCTTTGTCCA
LOC_Os05g13680
OsAffx.26869.1.S1_at--483--5791Chr05:7561170..7561194 (25 bp)
GACGCCGCGTGCAGGAAGGAACTCA
LOC_Os05g13680
OsAffx.26869.1.S1_at--1133--6231Chr05:7561242..7561266 (25 bp)
GATGGACGAACGATGGCGCTTGCAT
LOC_Os05g13680
OsAffx.26869.1.S1_at--597--871Chr05:7561254..7561278 (25 bp)
ATGGCGCTTGCATGGACCGATTGAC
LOC_Os05g13680
Target Sequence 
GGGTGCTCCACATCGTAGAGACCGCCGGGTTGTTCGACATGGTGGTGCCTCTTCTCGAGCAGGCCGACGCCCACGGCCGC
CTCGTGCTCTGGCGCCTGGAGCAGGAGGACGGGTCGGACAAAGGTGCTGTTTGTTCTTGCATTTGCATTAGCAGGCGACG
CGATATGGGGACGAGGAGGGTGCTAGTGACACAGGGATGGGGCCGTTGGGTGCGTGCTGCGCGGCCGGAGCGGCGAGTGC
GCGCCGGAGGAGATGAATGCCCTCGTCGGCAGCGCGGGAAATCCGACTCCTTCTTTGTCCACTTCGACGGCAGCCGACGC
CGCGTGCAGGAAGGAACTCAGCGGCTGGCGGCGCACGCGGGGAGGACCGACAAGCTGCTCCCCGCCCGATGGACGAACGA
TGGCGCTTGCATGGACCGATTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26869.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis