Browse Element(s) Details


OsAffx.26877.1.S1_at

Description tigr:9633.m01235
TID=OsAffx.26877.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1416010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14110NANA5+7861728..7868119transposon protein, putative, unclassified
LOC_Os05g14120OsAffx.31069.1.S1_x_at1/115+7868733..7871740hypothetical protein
LOC_Os05g14130OsAffx.14682.1.S1_at11/115+7873015..7873647Zinc finger, C2H2 type family protein
LOC_Os05g14130OsAffx.16380.1.S1_x_at1/115+7873015..7873647Zinc finger, C2H2 type family protein
LOC_Os05g14140OsAffx.14683.1.S1_at11/115+7876050..7876847hypothetical protein
LOC_Os05g14150NANA5+7886093..7886581Polygalacturonase precursor, putative
LOC_Os05g14160OsAffx.26877.1.S1_at10/115+7888945..7894995hypothetical protein
LOC_Os05g14170Os.18769.1.S1_at11/115+7906427..7915722PQQ enzyme repeat-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26877.1.S1_at--639--8711NONE
TGTCCCAAGGCGAACAATAGCTATG
NONE
OsAffx.26877.1.S1_at--134--6211Chr05:7893622..7893646 (25 bp)
GAGGCTATCAACAGGTCTGACAGAG
LOC_Os05g14160
OsAffx.26877.1.S1_at--807--2831Chr05:7893663..7893687 (25 bp)
AAGTATTCACACTAGCATTGGATAA
LOC_Os05g14160
OsAffx.26877.1.S1_at--548--2851Chr05:7893709..7893733 (25 bp)
AAGTGGCCTATTGCAATCAAACTAC
LOC_Os05g14160
OsAffx.26877.1.S1_at--474--8991Chr05:7893868..7893889 (22 bp)
TGAAGCCTCTACACCTTCACATTTA
LOC_Os05g14160
OsAffx.26877.1.S1_at--432--2271Chr05:7893918..7893942 (25 bp)
AAATCTTCCCACAAAACATGGCCTC
LOC_Os05g14160
OsAffx.26877.1.S1_at--95--2131Chr05:7893933..7893957 (25 bp)
ACATGGCCTCACTATCAGTGGTGGA
LOC_Os05g14160
OsAffx.26877.1.S1_at--679--8031Chr05:7894710..7894734 (25 bp)
GGAGTGTCACTCAGATAATGCTACA
LOC_Os05g14160
OsAffx.26877.1.S1_at--501--2991Chr05:7894795..7894819 (25 bp)
AATGTAGTGCTTCTAATTGCTGCAG
LOC_Os05g14160
OsAffx.26877.1.S1_at--576--71Chr05:7894810..7894834 (25 bp)
ATTGCTGCAGTGCTAGATCCGTCTA
LOC_Os05g14160
OsAffx.26877.1.S1_at--978--2751Chr05:7894867..7894891 (25 bp)
AAGACTTGTGTCACCTTGAGCGAGG
LOC_Os05g14160
Target Sequence 
TGTCCCAAGGCGAACAATAGCTATGAAAAATGTGAAGTACACATACACAACAATTGCCTTGGAGAGGCTATCAACAGGTC
TGACAGAGTGGAACATTAAGGACAAAGTATTCACACTAGCATTGGATAATGCATCAAACAACACTTCTGCAAGTGGCCTA
TTGCAATCAAACTACAAACATGATTTGCTTTTTGAAGCCTCTACACCTTCACATTTACAAGTGTTAAATTGGATTACAAG
TGAAAAAATCTTCCCACAAAACATGGCCTCACTATCAGTGGTGGAGGACAAGAAAAATAAGAGGCATGAAGCGGAGTGTC
ACTCAGATAATGCTACATTGAGAGAGTTGGGAAGGAATATAAGAGACAAATTTGGCAAGTATTGGGAGAAAGATTACAAT
GTAGTGCTTCTAATTGCTGCAGTGCTAGATCCGTCTAGAAGATTGTTTTATTTAGAGTGGATATATGAGAAGACTTGTGT
CACCTTGAGCGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26877.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis