Browse Element(s) Details


OsAffx.14682.1.S1_at

Description tigr:9633.m01232
TID=OsAffx.14682.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C2H2 type, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1413011/11Zinc finger, C2H2 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14090OsAffx.13127.1.S1_at1/115+7847517..7852292retrotransposon protein, putative, unclassified
LOC_Os05g14090OsAffx.13127.1.S1_x_at1/115+7847517..7852292retrotransposon protein, putative, unclassified
LOC_Os05g14090OsAffx.22699.1.S1_x_at1/115+7847517..7852292retrotransposon protein, putative, unclassified
LOC_Os05g14100Os.31845.1.S1_x_at1/115+7853969..7856906hypothetical protein
LOC_Os05g14110NANA5+7861728..7868119transposon protein, putative, unclassified
LOC_Os05g14120OsAffx.31069.1.S1_x_at1/115+7868733..7871740hypothetical protein
LOC_Os05g14130OsAffx.14682.1.S1_at11/115+7873015..7873647Zinc finger, C2H2 type family protein
LOC_Os05g14130OsAffx.16380.1.S1_x_at1/115+7873015..7873647Zinc finger, C2H2 type family protein
LOC_Os05g14140OsAffx.14683.1.S1_at11/115+7876050..7876847hypothetical protein
LOC_Os05g14150NANA5+7886093..7886581Polygalacturonase precursor, putative
LOC_Os05g14160OsAffx.26877.1.S1_at10/115+7888945..7894995hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14682.1.S1_at--668--2771Chr05:7873047..7873071 (25 bp)
AAGAGCCGACGAGAGCGTCAGCTCG
LOC_Os05g14130
OsAffx.14682.1.S1_at--999--5771Chr05:7873054..7873078 (25 bp)
GACGAGAGCGTCAGCTCGCTTGGCA
LOC_Os05g14130
OsAffx.14682.1.S1_at--527--1591Chr05:7873066..7873090 (25 bp)
AGCTCGCTTGGCACGGACGATCATG
LOC_Os05g14130
OsAffx.14682.1.S1_at--308--8511Chr05:7873074..7873098 (25 bp)
TGGCACGGACGATCATGCCGCCGCG
LOC_Os05g14130
OsAffx.14682.1.S1_at--895--8711Chr05:7873295..7873319 (25 bp)
TGTCGCGGAGCGTCGATTGCTATAG
LOC_Os05g14130
OsAffx.14682.1.S1_at--863--9371Chr05:7873307..7873331 (25 bp)
TCGATTGCTATAGCCAGTTCCGCCA
LOC_Os05g14130
OsAffx.14682.1.S1_at--542--3411Chr05:7873395..7873419 (25 bp)
CAGCAGCTTCACCATGTACTACGGC
LOC_Os05g14130
OsAffx.14682.1.S1_at--647--5911Chr05:7873465..7873489 (25 bp)
GAGCTAAGCCTGTTCGATGCGGCCA
LOC_Os05g14130
OsAffx.14682.1.S1_at--686--611Chr05:7873481..7873505 (25 bp)
ATGCGGCCACTGATCACGGCTTGCA
LOC_Os05g14130
OsAffx.14682.1.S1_at--1117--6431Chr05:7873492..7873516 (25 bp)
GATCACGGCTTGCACCTCGGCGTCG
LOC_Os05g14130
OsAffx.14682.1.S1_at--780--3951Chr05:7873552..7873576 (25 bp)
CGGACACCAGAAGGATCAGAGCAGC
LOC_Os05g14130
Target Sequence 
AAGAGCCGACGAGAGCGTCAGCTCGCTTGGCACGGACGATCATGCCGCCGCGGCGGAGCCCATGTCGTCGTCGCCGCCGC
CGGCGACGGCGACGGCCAGGCCGTACTACGAGTGCGTGTTCTGCAAGCGCGGGTTCACCACGGCGCAGGCGCTCGGCGGC
CACATGAACATCCACCGCCGCGACCGCGCCGCCAAGCCGGCCGGACCCGGCGCCGCGGCGCCCCCCCGCGACGCGTCCAC
GACGGCGGTGTCGCGGAGCGTCGATTGCTATAGCCAGTTCCGCCACCTGGCGGCGGCGTACCCAGTACCGGCGGCGACCA
GCGGCGCCGCCGGCACCGCCGGCAGCAGCAGCAGCTTCACCATGTACTACGGCGGCACGGGCGCCGGAGCGGAGGCGGCG
GTGGTGGCCGGCCCAAGGGAGCTAAGCCTGTTCGATGCGGCCACTGATCACGGCTTGCACCTCGGCGTCGGGCGCCGCGG
CGGCGGCGGTGACGGCGGCGAGTCGCGGACACCAGAAGGATCAGAGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14682.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis