Browse Element(s) Details


OsAffx.13127.1.S1_at

Description tigr:9631.m02978
TID=OsAffx.13127.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative cytochrome P-450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3042011/11Cytochrome P450 family protein
LOC_Os05g140901/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30360NANA3+17267633..17271770retrotransposon protein, putative, unclassified
LOC_Os03g30370Os.26886.3.S1_x_at8/113+17273764..17277105transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g30370Os.26886.1.S1_x_at7/113+17273764..17277105transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g30370OsAffx.16244.1.S1_x_at1/113+17273764..17277105transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g30390Os.26886.6.S1_s_at9/113+17279667..17282828transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g30390Os.26886.2.S1_s_at9/113+17279667..17282828transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g30390OsAffx.16467.1.S1_at4/113+17279667..17282828transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g30390OsAffx.3425.1.S1_at1/113+17279667..17282828transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g30400NANA3+17290524..17291552hypothetical protein
LOC_Os03g30410OsAffx.7199.2.S1_at11/113+17294667..17294995hypothetical protein
LOC_Os03g30410OsAffx.7199.2.S1_x_at9/113+17294667..17294995hypothetical protein
LOC_Os03g30420OsAffx.13127.1.S1_at11/113+17295532..17297178Cytochrome P450 family protein
LOC_Os03g30420OsAffx.13127.1.S1_x_at11/113+17295532..17297178Cytochrome P450 family protein
LOC_Os03g30430Os.11502.1.S1_at10/113+17302170..17305467expressed protein
LOC_Os03g30440OsAffx.13128.1.S1_at10/113+17310893..17314218hypothetical protein
LOC_Os03g30440Os.55650.1.A1_at3/113+17310893..17314218hypothetical protein
LOC_Os03g30440Os.52979.1.S1_at1/113+17310893..17314218hypothetical protein
LOC_Os03g30450OsAffx.31892.5.S1_x_at4/113+17319125..17327289retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g30450OsAffx.17842.1.S1_at3/113+17319125..17327289retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g30450OsAffx.31892.5.S1_at3/113+17319125..17327289retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g30450OsAffx.31892.1.S1_x_at1/113+17319125..17327289retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0010154biological_processfruit development
GO:0004497molecular_functionmonooxygenase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13127.1.S1_at--751--5631Chr03:17296086..17296110 (25 bp)
GACACGGTGGCGATTCTGCTGGAAT
LOC_Os03g30420
OsAffx.13127.1.S1_at--927--2171Chr03:17296085..17296109 (25 bp)
ACACGGTGGCGATTCTGCTGGAATG
LOC_Os03g30420
OsAffx.13127.1.S1_at--1079--8471Chr03:17296079..17296103 (25 bp)
TGGCGATTCTGCTGGAATGGATCAT
LOC_Os03g30420
OsAffx.13127.1.S1_at--755--112Chr05:7849397..7849561 (25 bp)
ATTCTGCTGGAATGGATCATGGCGA
LOC_Os05g14090
OsAffx.13127.1.S1_at--690--411Chr03:17296059..17296083 (25 bp)
ATCATGGCGAGGATGGTGCTGCACC
LOC_Os03g30420
OsAffx.13127.1.S1_at--189--3991Chr03:17295833..17295857 (25 bp)
CGGGCACCACGGCCATGGTCAACAT
LOC_Os03g30420
OsAffx.13127.1.S1_at--542--1791Chr03:17295791..17295815 (25 bp)
ACCCGGAGCTCTGGCCGGAGCCCGA
LOC_Os03g30420
OsAffx.13127.1.S1_at--890--4651Chr03:17295587..17295611 (25 bp)
GCGTCCACTTGTTGGAGCGCCTGAA
LOC_Os03g30420
OsAffx.13127.1.S1_at--1004--9211Chr03:17295584..17295608 (25 bp)
TCCACTTGTTGGAGCGCCTGAACAT
LOC_Os03g30420
OsAffx.13127.1.S1_at--537--10791Chr03:17295579..17295603 (25 bp)
TTGTTGGAGCGCCTGAACATGTCGC
LOC_Os03g30420
OsAffx.13127.1.S1_at--927--10851Chr03:17295576..17295600 (25 bp)
TTGGAGCGCCTGAACATGTCGCTGG
LOC_Os03g30420
Target Sequence 
GACACGGTGGCGATTCTGCTGGAATGGATCATGGCGAGGATGGTGCTGCACCCGGACATCCAGGCGAAGGCGCAGGCGGA
GCTCGACGCCGTCGTCGGCCGCGGGCGCGCCGTGTCGGACGGCGACGTCGCCGGCCTGCGCTACCTCCAGTGCGTCGTGA
AGGAGGCGCTCCGCGTGCACCCGCCGGGCCCGCTCCTGTCGTGGGCGCGCCTCGCCGTGCGCGACGCGCACGTCGGCGGC
CACGTGGTCCCCGCGGGCACCACGGCCATGGTCAACATGTGGGCCATCGCGCACGACCCGGAGCTCTGGCCGGAGCCCGA
CGAGTTCCGGCCGGAGCGGTTCGCGGAGGAGGACGTCAGCGTGCTCGGCGGCGACCTCCGCCTCGCGCCGTTCGGCGCGG
GGCGGCGCGCCTGCCCGGGCAAGACGCTCGCGCTCGCCACCGTCCACCTCTGGCTCGCGCAGCTGCTGCACCGCTTCGAG
TGGGCACCGGTCGGCGGCGGCGTCCACTTGTTGGAGCGCCTGAACATGTCGCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13127.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis