Browse Element(s) Details


Os.11502.1.S1_at

Description gb:AK121654.1
DB_XREF= gi:37991277
TID=Os.11502.1
CNT=60
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11502 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-003-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033061K11, full insert sequence.
FL= gb:AK058813.1 gb:AK121654.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3043010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30390Os.26886.6.S1_s_at9/113+17279667..17282828transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g30390Os.26886.2.S1_s_at9/113+17279667..17282828transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g30390OsAffx.16467.1.S1_at4/113+17279667..17282828transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g30390OsAffx.3425.1.S1_at1/113+17279667..17282828transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g30400NANA3+17290524..17291552hypothetical protein
LOC_Os03g30410OsAffx.7199.2.S1_at11/113+17294667..17294995hypothetical protein
LOC_Os03g30410OsAffx.7199.2.S1_x_at9/113+17294667..17294995hypothetical protein
LOC_Os03g30420OsAffx.13127.1.S1_at11/113+17295532..17297178Cytochrome P450 family protein
LOC_Os03g30420OsAffx.13127.1.S1_x_at11/113+17295532..17297178Cytochrome P450 family protein
LOC_Os03g30430Os.11502.1.S1_at10/113+17302170..17305467expressed protein
LOC_Os03g30440OsAffx.13128.1.S1_at10/113+17310893..17314218hypothetical protein
LOC_Os03g30440Os.55650.1.A1_at3/113+17310893..17314218hypothetical protein
LOC_Os03g30440Os.52979.1.S1_at1/113+17310893..17314218hypothetical protein
LOC_Os03g30450OsAffx.31892.5.S1_x_at4/113+17319125..17327289retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g30450OsAffx.17842.1.S1_at3/113+17319125..17327289retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g30450OsAffx.31892.5.S1_at3/113+17319125..17327289retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g30450OsAffx.31892.1.S1_x_at1/113+17319125..17327289retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0010005cellular_componentcortical microtubule (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11502.1.S1_at--924--5551Chr03:17303361..17303385 (25 bp)
GAAACCATCACCTGCAAAGGCTGAT
LOC_Os03g30430
Os.11502.1.S1_at--246--2951Chr03:17303345..17303369 (25 bp)
AAGGCTGATGCCACCAAGCAGATTC
LOC_Os03g30430
Os.11502.1.S1_at--920--3411Chr03:17303327..17303351 (25 bp)
CAGATTCCAGCTGGGATTCAGGGCA
LOC_Os03g30430
Os.11502.1.S1_at--111--8511NONE
TGGAAACTTTCTTACGGATCGCCCT
NONE
Os.11502.1.S1_at--410--3891Chr03:17302540..17302564 (25 bp)
CTGGGCTACCTCTTTGGTGGAAACT
LOC_Os03g30430
Os.11502.1.S1_at--717--8031Chr03:17302512..17302536 (25 bp)
GGAGTGATCCTGGTGCACTGTAGCA
LOC_Os03g30430
Os.11502.1.S1_at--1050--5311Chr03:17302474..17302498 (25 bp)
GAAGTCTACCGCTATCCTTGTTTAT
LOC_Os03g30430
Os.11502.1.S1_at--899--6971Chr03:17302403..17302427 (25 bp)
GTACCTATGACTCCGTGGCAAACAC
LOC_Os03g30430
Os.11502.1.S1_at--242--2411Chr03:17302384..17302408 (25 bp)
AAACACCCTGCCTGGGATCATGATC
LOC_Os03g30430
Os.11502.1.S1_at--993--6351Chr03:17302363..17302387 (25 bp)
GATCCTGTCGCTTAAATTTCGAGGC
LOC_Os03g30430
Os.11502.1.S1_at--286--9631Chr03:17302278..17302302 (25 bp)
TCATGTCTATGTTTTTGCTCAGGAT
LOC_Os03g30430
Target Sequence 
GAAACCATCACCTGCAAAGGCTGATGCCACCAAGCAGATTCCAGCTGGGATTCAGGGCAGCCGGAGCAATAACAACTACC
ATAGAGCNTNNNNNGNNNCCANNNNGAANCACTGGAAACTTTCTTACGGATCGCCCTTCGACCAAGGTCCATGCTGCCCC
TGGTGGTGGATCTTCCCTGGGCTACCTCTTTGGTGGAAACTGAAGGAGTGATCCTGGTGCACTGTAGCACCGGATGAAGA
AGGAAGTCTACCGCTATCCTTGTTTATCAGAACTGGGAACCCCCATTGTTTTATCATTCTCTATGCATGTCCCGTACCTA
TGACTCCGTGGCAAACACCCTGCCTGGGATCATGATCCTGTCGCTTAAATTTCGAGGCAAATCGTATGCCTGAATCTTCC
NAAAATTATCGTGTGCCTGTGCCTTGGNTTNNAGTCACGTTCATGTCTATGTTTTTGCTCAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11502.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis