Browse Element(s) Details


OsAffx.13128.1.S1_at

Description tigr:9631.m02980
TID=OsAffx.13128.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3044010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30400NANA3+17290524..17291552hypothetical protein
LOC_Os03g30410OsAffx.7199.2.S1_at11/113+17294667..17294995hypothetical protein
LOC_Os03g30410OsAffx.7199.2.S1_x_at9/113+17294667..17294995hypothetical protein
LOC_Os03g30420OsAffx.13127.1.S1_at11/113+17295532..17297178Cytochrome P450 family protein
LOC_Os03g30420OsAffx.13127.1.S1_x_at11/113+17295532..17297178Cytochrome P450 family protein
LOC_Os03g30430Os.11502.1.S1_at10/113+17302170..17305467expressed protein
LOC_Os03g30440OsAffx.13128.1.S1_at10/113+17310893..17314218hypothetical protein
LOC_Os03g30440Os.55650.1.A1_at3/113+17310893..17314218hypothetical protein
LOC_Os03g30440Os.52979.1.S1_at1/113+17310893..17314218hypothetical protein
LOC_Os03g30450OsAffx.31892.5.S1_x_at4/113+17319125..17327289retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g30450OsAffx.17842.1.S1_at3/113+17319125..17327289retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g30450OsAffx.31892.5.S1_at3/113+17319125..17327289retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g30450OsAffx.31892.1.S1_x_at1/113+17319125..17327289retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g30460Os.26723.1.S1_at11/113+17331418..17341791Vps52/Sac2 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13128.1.S1_at--489--1631Chr03:17314143..17314163 (21 bp)
AGCGGAAGCTCGAGGCCAGAGTCTC
LOC_Os03g30440
OsAffx.13128.1.S1_at--409--674Chr12:13640149..13640169 (21 bp)
ATGAAGTTCATATGCATGTGGGTGC
NONE
OsAffx.13128.1.S1_at--59--3591Chr03:17312445..17312469 (25 bp)
CATTTGGTGGTCTTGTCTGGCCAAG
LOC_Os03g30440
OsAffx.13128.1.S1_at--226--6311Chr03:17312417..17312441 (25 bp)
GATGAGTTCTGTCAAGTCCCAAACA
LOC_Os03g30440
OsAffx.13128.1.S1_at--1126--7511Chr03:17311926..17311947 (22 bp)
GTGGCTGTTATAACCATCGGCGGTT
LOC_Os03g30440
OsAffx.13128.1.S1_at--1015--3651Chr03:17311904..17311928 (25 bp)
GTTTGACCGGCCACCCTATGTCGGT
LOC_Os03g30440
OsAffx.13128.1.S1_at--894--7191Chr03:17311885..17311909 (25 bp)
GTCGGTCAGACCTGCAGGCAACATA
LOC_Os03g30440
OsAffx.13128.1.S1_at--544--7671NONE
GGGATTTCGATTCCAACAGCCAAAA
NONE
OsAffx.13128.1.S1_at--719--1091Chr03:17311043..17311067 (25 bp)
AGTGGCTGCGGAGGACCTCTTCCTT
LOC_Os03g30440
OsAffx.13128.1.S1_at--133--3751Chr03:17311027..17311051 (25 bp)
CTCTTCCTTGACTTTCCCAAAGAAG
LOC_Os03g30440
OsAffx.13128.1.S1_at--835--5531Chr03:17311003..17311027 (25 bp)
GAAACAGGCGGCAACGAGAGAGACA
LOC_Os03g30440
Target Sequence 
AGCGGAAGCTCGAGGCCAGAGTCTCCTTTACATTGAGACATGGACATCATGAAGTTCATATGCATGTGGGTGCATTTGGT
GGTCTTGTCTGGCCAAGTGTGATGAGTTCTGTCAAGTCCCAAACAAAGAGAGAAGTGGCTGTTATAACCATCGGCGGTTT
GACCGGCCACCCTATGTCGGTCAGACCTGCAGGCAACATAAATTGGGGATTTCGATTCCAACAGCCAAAAGTTTTAAAAC
CGCCTATTCACCCCCCTCTACTCGGCCACGGAGGACGGAGGAGGCAGGCGCCAGTGGCTGCGGAGGACCTCTTCCTTGAC
TTTCCCAAAGAAGAAACAGGCGGCAACGAGAGAGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13128.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis