Browse Element(s) Details


OsAffx.7199.2.S1_x_at

Description tigr:9631.m02977
TID=OsAffx.7199.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g304109/11hypothetical protein
LOC_Os11g254701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30360NANA3+17267633..17271770retrotransposon protein, putative, unclassified
LOC_Os03g30370Os.26886.3.S1_x_at8/113+17273764..17277105transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g30370Os.26886.1.S1_x_at7/113+17273764..17277105transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g30370OsAffx.16244.1.S1_x_at1/113+17273764..17277105transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g30390Os.26886.6.S1_s_at9/113+17279667..17282828transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g30390Os.26886.2.S1_s_at9/113+17279667..17282828transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g30390OsAffx.16467.1.S1_at4/113+17279667..17282828transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g30390OsAffx.3425.1.S1_at1/113+17279667..17282828transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g30400NANA3+17290524..17291552hypothetical protein
LOC_Os03g30410OsAffx.7199.2.S1_at11/113+17294667..17294995hypothetical protein
LOC_Os03g30410OsAffx.7199.2.S1_x_at9/113+17294667..17294995hypothetical protein
LOC_Os03g30420OsAffx.13127.1.S1_at11/113+17295532..17297178Cytochrome P450 family protein
LOC_Os03g30420OsAffx.13127.1.S1_x_at11/113+17295532..17297178Cytochrome P450 family protein
LOC_Os03g30430Os.11502.1.S1_at10/113+17302170..17305467expressed protein
LOC_Os03g30440OsAffx.13128.1.S1_at10/113+17310893..17314218hypothetical protein
LOC_Os03g30440Os.55650.1.A1_at3/113+17310893..17314218hypothetical protein
LOC_Os03g30440Os.52979.1.S1_at1/113+17310893..17314218hypothetical protein
LOC_Os03g30450OsAffx.31892.5.S1_x_at4/113+17319125..17327289retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g30450OsAffx.17842.1.S1_at3/113+17319125..17327289retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g30450OsAffx.31892.5.S1_at3/113+17319125..17327289retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g30450OsAffx.31892.1.S1_x_at1/113+17319125..17327289retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7199.2.S1_x_at--673--3711Chr03:17295009..17295033 (25 bp)
CTAGCATGGGCGATGCTGCTATGCT
NONE
OsAffx.7199.2.S1_x_at--673--3833Chr11:14016877..14016900 (24 bp)
CTGCTATGCTGGGATCCGGCAAGAT
LOC_Os11g25470
OsAffx.7199.2.S1_x_at--395--5791Chr03:17294966..17294990 (25 bp)
GACGACTTCACACGCCGGCGGGAGC
LOC_Os03g30410
OsAffx.7199.2.S1_x_at--251--3991Chr03:17294948..17294972 (25 bp)
CGGGAGCAGCAACACAGCTTTGCAG
LOC_Os03g30410
OsAffx.7199.2.S1_x_at--141--7651Chr03:17294947..17294971 (25 bp)
GGGAGCAGCAACACAGCTTTGCAGG
LOC_Os03g30410
OsAffx.7199.2.S1_x_at--477--3951Chr03:17294918..17294942 (25 bp)
CGGCAAGACGGTGGCGGCTTCGCAC
LOC_Os03g30410
OsAffx.7199.2.S1_x_at--1090--8371Chr03:17294890..17294914 (25 bp)
GGCGAGAGCAGCACGGCTTCGCAGG
LOC_Os03g30410
OsAffx.7199.2.S1_x_at--207--4691Chr03:17294841..17294865 (25 bp)
GCGGCTTCGCACACCGGCGGAAGCA
LOC_Os03g30410
OsAffx.7199.2.S1_x_at--333--4671Chr03:17294788..17294812 (25 bp)
GCGTGGCCGCCTCCGAGAAAGATTA
LOC_Os03g30410
OsAffx.7199.2.S1_x_at--451--7551Chr03:17294786..17294810 (25 bp)
GTGGCCGCCTCCGAGAAAGATTAGG
LOC_Os03g30410
OsAffx.7199.2.S1_x_at--313--4531Chr03:17294783..17294807 (25 bp)
GCCGCCTCCGAGAAAGATTAGGATT
LOC_Os03g30410
Target Sequence 
CTAGCATGGGCGATGCTGCTATGCTGGGATCCGGCAAGATGGCGACGACTTCACACGCCGGCGGGAGCAGCAACACAGCT
TTGCAGGGATCCGGCAAGACGGTGGCGGCTTCGCACGCCGGCGAGAGCAGCACGGCTTCGCAGGGATTACGAAAGACGGC
GGGCGGCGGCGGCTTCGCACACCGGCGGAAGCAGCGCAGCTTCGCTCCTGGAATCTACGTCGCGTGGCCGCCTCCGAGAA
AGATTAGGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7199.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis