Browse Element(s) Details


OsAffx.26949.1.S1_at

Description tigr:9633.m01707
TID=OsAffx.26949.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Stigma-specific protein, Stig1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1894011/11Stigma-specific protein, Stig1 containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g18890OsAffx.21269.1.S1_x_at1/115+10946293..10946670retrotransposon protein, putative, unclassified
LOC_Os05g18900Os.14491.2.S1_x_at1/115+10947466..10954011transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g18900Os.47463.1.S1_x_at1/115+10947466..10954011transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g18900OsAffx.9860.1.S1_x_at1/115+10947466..10954011transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g18910Os.46995.1.S1_x_at1/115+10957906..10960833retrotransposon protein, putative, unclassified
LOC_Os05g18920NANA5+10961163..10965386retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g18930NANA5+10965946..10968207retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g18940OsAffx.26949.1.S1_at11/115+10970220..10970627Stigma-specific protein, Stig1 containing protein
LOC_Os05g18950Os.23548.1.S1_at11/115+10979730..10981461pentatricopeptide, putative, expressed
LOC_Os05g18960OsAffx.27108.2.S1_s_at11/115+10982042..10982641GRF zinc finger family protein
LOC_Os05g18970OsAffx.26950.1.S1_at11/115+10982991..10985566hypothetical protein
LOC_Os05g18980OsAffx.8589.1.S1_at1/115+10993853..10997167transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26949.1.S1_at--324--871Chr05:10970274..10970298 (25 bp)
ATGGCGGCCACCAGCGCAAGCACGG
LOC_Os05g18940
OsAffx.26949.1.S1_at--897--4111Chr05:10970288..10970312 (25 bp)
CGCAAGCACGGCTCCGGTCGGGATA
LOC_Os05g18940
OsAffx.26949.1.S1_at--834--5091Chr05:10970293..10970317 (25 bp)
GCACGGCTCCGGTCGGGATAAGGAA
LOC_Os05g18940
OsAffx.26949.1.S1_at--347--7851Chr05:10970308..10970332 (25 bp)
GGATAAGGAAAAGCCGGTTTCTCAT
LOC_Os05g18940
OsAffx.26949.1.S1_at--603--951Chr05:10970313..10970337 (25 bp)
AGGAAAAGCCGGTTTCTCATGACGC
LOC_Os05g18940
OsAffx.26949.1.S1_at--265--5531Chr05:10970315..10970339 (25 bp)
GAAAAGCCGGTTTCTCATGACGCAG
LOC_Os05g18940
OsAffx.26949.1.S1_at--494--2351Chr05:10970317..10970341 (25 bp)
AAAGCCGGTTTCTCATGACGCAGCA
LOC_Os05g18940
OsAffx.26949.1.S1_at--254--2671Chr05:10970318..10970342 (25 bp)
AAGCCGGTTTCTCATGACGCAGCAG
LOC_Os05g18940
OsAffx.26949.1.S1_at--550--4491Chr05:10970320..10970344 (25 bp)
GCCGGTTTCTCATGACGCAGCAGGG
LOC_Os05g18940
OsAffx.26949.1.S1_at--90--8231Chr05:10970344..10970368 (25 bp)
GGCAGGGTGCCGATCCCTACTACTA
LOC_Os05g18940
OsAffx.26949.1.S1_at--612--7271Chr05:10970350..10970374 (25 bp)
GTGCCGATCCCTACTACTACTACAG
LOC_Os05g18940
Target Sequence 
ATGGCGGCCACCAGCGCAAGCACGGCTCCGGTCGGGATAAGGAAAAGCCGGTTTCTCATGACGCAGCAGGGGCAGGGTGC
CGATCCCTACTACTACTACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26949.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis