Browse Element(s) Details


OsAffx.27037.1.S1_at

Description tigr:9633.m02473
TID=OsAffx.27037.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2724011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27200Os.19105.1.S1_at1/115+15739606..15743381hypothetical protein
LOC_Os05g27200OsAffx.21595.1.S1_x_at1/115+15739606..15743381hypothetical protein
LOC_Os05g27210NANA5+15746339..15747697retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g27220NANA5+15748116..15750183retrotransposon protein, putative, unclassified
LOC_Os05g27230Os.14491.2.S1_x_at3/115+15752544..15759581transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27230Os.47463.1.S1_x_at3/115+15752544..15759581transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27240OsAffx.27037.1.S1_at11/115+15763269..15763730hypothetical protein
LOC_Os05g27250NANA5+15768860..15769782hypothetical protein
LOC_Os05g27260OsAffx.21779.1.S1_at11/115+15771681..15773482retrotransposon protein, putative, unclassified
LOC_Os05g27260OsAffx.21779.3.S1_at2/115+15771681..15773482retrotransposon protein, putative, unclassified
LOC_Os05g27270NANA5+15774254..15776460retrotransposon protein, putative, unclassified
LOC_Os05g27280NANA5+15777089..15779975retrotransposon protein, putative, unclassified
LOC_Os05g27290NANA5+15783604..15784166retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g27304OsAffx.14846.1.S1_at11/115+15788413..15795503POT family protein, expressed
LOC_Os05g27304OsAffx.4441.1.S1_at10/115+15788413..15795503POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27037.1.S1_at--585--2711Chr05:15763301..15763325 (25 bp)
AAGCACCAATCGTTCAGTGCCCCAA
LOC_Os05g27240
OsAffx.27037.1.S1_at--621--3431Chr05:15763328..15763352 (25 bp)
CAGTACCTTTATTCCTCTTCGTACG
LOC_Os05g27240
OsAffx.27037.1.S1_at--375--9191Chr05:15763425..15763449 (25 bp)
TGCCTATGTGCCCTCACCGGAAAAG
LOC_Os05g27240
OsAffx.27037.1.S1_at--228--4351Chr05:15763492..15763516 (25 bp)
CCAGCGCCGCTGTAGCCAATGGCTA
LOC_Os05g27240
OsAffx.27037.1.S1_at--873--831Chr05:15763510..15763534 (25 bp)
ATGGCTACCCTGGTTCCAACGGGAG
LOC_Os05g27240
OsAffx.27037.1.S1_at--1021--7631Chr05:15763530..15763554 (25 bp)
GGGAGAGCCGCCTTCCTACCTAGGT
LOC_Os05g27240
OsAffx.27037.1.S1_at--190--4311Chr05:15763595..15763619 (25 bp)
CCTAGCGCCGGTGCAACCGATGGGA
LOC_Os05g27240
OsAffx.27037.1.S1_at--1132--6251Chr05:15763613..15763637 (25 bp)
GATGGGAGATGACACCCCTGCTGAA
LOC_Os05g27240
OsAffx.27037.1.S1_at--641--8991Chr05:15763634..15763658 (25 bp)
TGAAGAGCCGCCGTCGCAACAGACG
LOC_Os05g27240
OsAffx.27037.1.S1_at--862--3251Chr05:15763650..15763674 (25 bp)
CAACAGACGGGAGATGACGCTGCTT
LOC_Os05g27240
OsAffx.27037.1.S1_at--816--1291Chr05:15763661..15763685 (25 bp)
AGATGACGCTGCTTGTCATCAGCGC
LOC_Os05g27240
Target Sequence 
AAGCACCAATCGTTCAGTGCCCCAACCCAGTACCTTTATTCCTCTTCGTACGCCGCCCTTCCCAGCGCAACCATGCCGCA
TCGCCTCCCTTCCTAGTGCCGCCACGCGCACCTCCACCCGCCACTGCCTATGTGCCCTCACCGGAAAAGCCTCCCGTCCA
CTCCCCCCCTCGGCTGCCTCACCGACCTTCCCCAGCGCCGCTGTAGCCAATGGCTACCCTGGTTCCAACGGGAGAGCCGC
CTTCCTACCTAGGTCGGCCCAACCGGCGTCCCAAGCGGCAGCCCGACCACCATCCCTAGCGCCGGTGCAACCGATGGGAG
ATGACACCCCTGCTGAAGAGCCGCCGTCGCAACAGACGGGAGATGACGCTGCTTGTCATCAGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27037.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis