Browse Element(s) Details


OsAffx.27046.1.S1_at

Description tigr:9633.m02527
TID=OsAffx.27046.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2774011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27690NANA5+16050707..16054311transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27700NANA5+16056341..16058793transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27710Os.46314.2.S1_x_at1/115+16060771..16062555transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27720NANA5+16063050..16067794transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27730Os.11773.1.S1_at11/115+16072123..16074604WRKY DNA binding domain containing protein, expressed
LOC_Os05g27740OsAffx.27046.1.S1_at11/115+16078284..16081517hypothetical protein
LOC_Os05g27740Os.23623.1.A1_at1/115+16078284..16081517hypothetical protein
LOC_Os05g27749OsAffx.27053.1.S1_at11/115+16083470..16084687hypothetical protein
LOC_Os05g27760OsAffx.27054.1.S1_at11/115+16089380..16090042hypothetical protein
LOC_Os05g27770NANA5+16094038..16098387retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g27780Os.37909.1.S1_at11/115+16100403..16101538expressed protein
LOC_Os05g27780Os.25952.1.S1_at11/115+16100403..16101538expressed protein
LOC_Os05g27790Os.48871.1.A1_at11/115+16105976..16108654expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27046.1.S1_at--220--251Chr05:16080661..16080891 (25 bp)
ATATCGGCCATGGAGCCTTCGGAAA
LOC_Os05g27740
OsAffx.27046.1.S1_at--896--8071Chr05:16080573..16080595 (23 bp)
GGAGCCTATTTATCGCCGGCAGGGT
LOC_Os05g27740
OsAffx.27046.1.S1_at--417--10291Chr05:16078840..16078864 (25 bp)
TTTGCCGGCAAGTCTCCATGGGTGT
LOC_Os05g27740
OsAffx.27046.1.S1_at--125--9031Chr05:16078711..16078735 (25 bp)
TGCAACTCCGTCTTCGGCCAGGAGG
LOC_Os05g27740
OsAffx.27046.1.S1_at--634--6411Chr05:16078681..16078705 (25 bp)
GATCTGCTCCTAGCAACGACTGCAA
LOC_Os05g27740
OsAffx.27046.1.S1_at--719--5711Chr05:16078664..16078688 (25 bp)
GACTGCAACAGCTTCTCGTGGCCTT
LOC_Os05g27740
OsAffx.27046.1.S1_at--975--9431Chr05:16078637..16078661 (25 bp)
TCGGCTGGATCTGTTGTCACTCGGA
LOC_Os05g27740
OsAffx.27046.1.S1_at--1031--5891Chr05:16078614..16078638 (25 bp)
GAGCTCCCAGCTCATGGTGCATGAT
LOC_Os05g27740
OsAffx.27046.1.S1_at--90--8611Chr05:16078556..16078580 (25 bp)
TGGTGCCTGGACGAGAGCTTCCAAT
LOC_Os05g27740
OsAffx.27046.1.S1_at--864--9591Chr05:16078508..16078532 (25 bp)
TCATAGGATTTCACTTCCCCATCCA
LOC_Os05g27740
OsAffx.27046.1.S1_at--967--571Chr05:16078369..16078512 (25 bp)
ATCCATGGTTTGTTGTTCGGCTTGA
LOC_Os05g27740
Target Sequence 
ATATCGGCCATGGAGCCTTCGGAAAACAATGAAAACAGTGTGTTTACTGAAAGCAGGAGGAGAGGAAGGATTTGGCGCCG
ACACGATGGGGGAGCCTATTTATCGCCGGCAGGGTTTGTCCCTAGTTGGTGCTTTTGCCGGCAAGTCTCCATGGGTGTCG
GTGTGGTCGGCGGCAGCGATGGTTGGTGGCGGTGGAGGTGCGAGATCCGAAGATCAGTGGAAGAATCGACGGATGGAGAT
GGCTCCTTGTGGCGGCGTCGGCTGCAACTCCGTCTTCGGCCAGGAGGTCGCCGATCTGCTCCTAGCAACGACTGCAACAG
CTTCTCGTGGCCTTCGTCGGCTGGATCTGTTGTCACTCGGAGCTCCCAGCTCATGGTGCATGATGATAGCCCGTCGGCGA
TGTGGCGGCGGTTTCTCTGGTGCCTGGACGAGAGCTTCCAATGCCAAGGTTCCATCAGTCAAGATTCATAGGATTTCACT
TCCCCATCCATGGTTTGTTGTTCGGCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27046.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis