Browse Element(s) Details


Os.11773.1.S1_at

Description gb:AK121190.1
DB_XREF= gi:37990813
TID=Os.11773.1
CNT=34
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.11773 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023086B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023086B03, full insert sequence.
FL= gb:AK121190.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2773011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27680Os.51642.1.S1_at5/115+16049162..16050065expressed protein
LOC_Os05g27680OsAffx.7623.1.S1_at3/115+16049162..16050065expressed protein
LOC_Os05g27680Os.51642.1.S1_x_at3/115+16049162..16050065expressed protein
LOC_Os05g27690NANA5+16050707..16054311transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27700NANA5+16056341..16058793transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27710Os.46314.2.S1_x_at1/115+16060771..16062555transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27720NANA5+16063050..16067794transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27730Os.11773.1.S1_at11/115+16072123..16074604WRKY DNA binding domain containing protein, expressed
LOC_Os05g27740OsAffx.27046.1.S1_at11/115+16078284..16081517hypothetical protein
LOC_Os05g27740Os.23623.1.A1_at1/115+16078284..16081517hypothetical protein
LOC_Os05g27749OsAffx.27053.1.S1_at11/115+16083470..16084687hypothetical protein
LOC_Os05g27760OsAffx.27054.1.S1_at11/115+16089380..16090042hypothetical protein
LOC_Os05g27770NANA5+16094038..16098387retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11773.1.S1_at--129--6831Chr05:16074166..16074190 (25 bp)
GTATTTTCGCCTCGCCGTATACGTA
LOC_Os05g27730
Os.11773.1.S1_at--885--2071Chr05:16074247..16074271 (25 bp)
ACATACATACTCTCGTACACACGTA
LOC_Os05g27730
Os.11773.1.S1_at--611--7031Chr05:16074261..16074285 (25 bp)
GTACACACGTAGTAGCATACATATA
LOC_Os05g27730
Os.11773.1.S1_at--977--4851Chr05:16074309..16074333 (25 bp)
GCTAGCTAGGGAGTGAGATCCAATT
LOC_Os05g27730
Os.11773.1.S1_at--801--211Chr05:16074331..16074355 (25 bp)
ATTTGTTGATTCGTTGCAGGCCACT
LOC_Os05g27730
Os.11773.1.S1_at--877--8651Chr05:16074362..16074386 (25 bp)
TGGGCCACACCGGAAACAGTACACG
LOC_Os05g27730
Os.11773.1.S1_at--547--1171Chr05:16074379..16074403 (25 bp)
AGTACACGCGTATACACCACACTTG
LOC_Os05g27730
Os.11773.1.S1_at--301--1711Chr05:16074394..16074418 (25 bp)
ACCACACTTGGGATACGCGTACGTA
LOC_Os05g27730
Os.11773.1.S1_at--72--4651Chr05:16074410..16074434 (25 bp)
GCGTACGTACGCACATGTACACGTA
LOC_Os05g27730
Os.11773.1.S1_at--287--3351Chr05:16074429..16074453 (25 bp)
CACGTAGTTTTGTGCCTTTGTAACT
LOC_Os05g27730
Os.11773.1.S1_at--55--8711Chr05:16074439..16074463 (25 bp)
TGTGCCTTTGTAACTGCTGAGAGAC
LOC_Os05g27730
Target Sequence 
GTATTTTCGCCTCGCCGTATACGTACGGCCGTATANCGTACGTATACACGCTCGCACGCCCTGCCCAACACGGCAATACA
CACATACATACTCTCGTACACACGTAGTAGCATACATATACAGTATAGTAGGTGGTAGTGGTAGCTAGCTAGGGAGTGAG
ATCCAATTTGTTGATTCGTTGCAGGCCACTGCCACGTGGGCCACACCGGAAACAGTACACGCGTATACACCACACTTGGG
ATACGCGTACGTACGCACATGTACACGTAGTTTTGTGCCTTTGTAACTGCTGAGAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11773.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis