Browse Element(s) Details


OsAffx.27207.1.S1_at

Description tigr:9630.m02558
TID=OsAffx.27207.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2702010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27000Os.27422.2.S1_at11/112+15859690..15870539ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os02g27000Os.27422.1.S1_at7/112+15859690..15870539ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os02g27010NANA2+15873981..15875254retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g27020OsAffx.27207.1.S1_at10/112+15877457..15878416hypothetical protein
LOC_Os02g27030Os.12726.1.S1_at11/112+15885668..15889423Cysteine proteinase 1 precursor, putative, expressed
LOC_Os02g27030Os.20514.1.S1_x_at1/112+15885668..15889423Cysteine proteinase 1 precursor, putative, expressed
LOC_Os02g27040OsAffx.12218.1.S1_at11/112+15893855..15895179hypothetical protein
LOC_Os02g27050OsAffx.7362.1.S1_x_at1/112+15896400..15898346transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27207.1.S1_at--58--10771NONE
TTGTGCCTGAGGTTTACTTAAAAGC
NONE
OsAffx.27207.1.S1_at--668--71Chr02:15877712..15877736 (25 bp)
ATTGCTGGGAGAGCGCCACGTCAGC
LOC_Os02g27020
OsAffx.27207.1.S1_at--673--4172Chr06:16744743..16745134 (25 bp)
CGCCACGTCAGCGATTTTTTAGAAA
NONE
OsAffx.27207.1.S1_at--989--2612Chr03:30075043..30075067 (25 bp)
AACCCCTCATCATCTGGTGAAATAG
NONE
OsAffx.27207.1.S1_at--65--291Chr02:15877654..15877678 (25 bp)
ATAGCAAACACGTTCGAATTCACGT
LOC_Os02g27020
OsAffx.27207.1.S1_at--603--5211Chr02:15877639..15877663 (25 bp)
GAATTCACGTGGACCGTACTATCTG
LOC_Os02g27020
OsAffx.27207.1.S1_at--674--7011Chr02:15877624..15877648 (25 bp)
GTACTATCTGATACGAGGCTTGATC
LOC_Os02g27020
OsAffx.27207.1.S1_at--21--931Chr02:15877609..15877633 (25 bp)
AGGCTTGATCCAACCATCCATGTGG
LOC_Os02g27020
OsAffx.27207.1.S1_at--995--3632Chr03:30075149..30075173 (25 bp)
CTTCCACCACCGTTGAATCAGAGAA
NONE
OsAffx.27207.1.S1_at--225--8171Chr02:15877541..15877565 (25 bp)
GGAACGAAGGCTCAGATCCCTTGAG
LOC_Os02g27020
OsAffx.27207.1.S1_at--408--6811Chr02:15877492..15877516 (25 bp)
GTTTTCTTTAAGCAGACACTCTTCA
LOC_Os02g27020
Target Sequence 
TTGTGCCTGAGGTTTACTTAAAAGCCGTGGGATTGCTGGGAGAGCGCCACGTCAGCGATTTTTTAGAAAACCCCTCATCA
TCTGGTGAAATAGCAAACACGTTCGAATTCACGTGGACCGTACTATCTGATACGAGGCTTGATCCAACCATCCATGTGGC
CCTGTGTGCCGACCCTTCCACCACCGTTGAATCAGAGAAAAAGGAACGAAGGCTCAGATCCCTTGAGCCAAGCCTCCTAA
CAAAAACCCTAGTTTTCTTTAAGCAGACACTCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27207.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis