Browse Element(s) Details


OsAffx.27258.1.S1_at

Description tigr:9633.m03767
TID=OsAffx.27258.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4036011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40300NANA5+23602655..23602976expressed protein
LOC_Os05g40310OsAffx.4573.1.S1_at11/115+23605464..23607764expressed protein
LOC_Os05g40320Os.53940.1.S1_at11/115+23609733..23614179pentatricopeptide, putative, expressed
LOC_Os05g40320Os.53940.1.S2_at10/115+23609733..23614179pentatricopeptide, putative, expressed
LOC_Os05g40320OsAffx.14143.1.S1_at1/115+23609733..23614179pentatricopeptide, putative, expressed
LOC_Os05g40330Os.50012.1.S1_at11/115+23614535..23617464auxin efflux carrier family protein, putative, expressed
LOC_Os05g40340OsAffx.15037.1.S1_at10/115+23621899..23622617hypothetical protein
LOC_Os05g40350OsAffx.27257.1.S1_at11/115+23624347..23624876hypothetical protein
LOC_Os05g40360OsAffx.27258.1.S1_at11/115+23626304..23627186hypothetical protein
LOC_Os05g40370NANA5+23638300..23640886hypothetical protein
LOC_Os05g40384Os.56168.1.S1_at11/115+23645362..23655166Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27258.1.S1_at--181--4431Chr05:23626783..23626807 (25 bp)
GCCATCGTCAACCACCTTGTTGGCG
LOC_Os05g40360
OsAffx.27258.1.S1_at--1072--9691Chr05:23626776..23626800 (25 bp)
TCAACCACCTTGTTGGCGCCGGCAA
LOC_Os05g40360
OsAffx.27258.1.S1_at--77--2231Chr05:23626617..23626641 (25 bp)
ACAAGTTCGATGATGCTCGCGCTAC
LOC_Os05g40360
OsAffx.27258.1.S1_at--1161--691Chr05:23626608..23626632 (25 bp)
ATGATGCTCGCGCTACCGGGAAGAA
LOC_Os05g40360
OsAffx.27258.1.S1_at--465--9331Chr05:23626601..23626625 (25 bp)
TCGCGCTACCGGGAAGAAGTACATT
LOC_Os05g40360
OsAffx.27258.1.S1_at--13--1451Chr05:23626587..23626611 (25 bp)
AGAAGTACATTAGCCAAGTCGAGGA
LOC_Os05g40360
OsAffx.27258.1.S1_at--390--7651Chr05:23626515..23626539 (25 bp)
GGGAGTGCCAACAGTACCGAAAGAT
LOC_Os05g40360
OsAffx.27258.1.S1_at--729--7271Chr05:23626511..23626535 (25 bp)
GTGCCAACAGTACCGAAAGATCGTC
LOC_Os05g40360
OsAffx.27258.1.S1_at--1115--8012Chr05:23626421..23626445 (25 bp)
GGAGGATAGCCACCACTGCACAGCC
LOC_Os05g40360
OsAffx.27258.1.S1_at--168--8651Chr05:23626372..23626396 (25 bp)
TGGGAAGGCTATGGAGTCTTTTGCA
LOC_Os05g40360
OsAffx.27258.1.S1_at--128--3472Chr05:23626349..23626373 (25 bp)
CAGTGATGATTGTAGGATCAAGCAT
LOC_Os05g40360
Target Sequence 
GCCATCGTCAACCACCTTGTTGGCGCCGGCAACCCAGACGCCTGCTTCATCACCGGTGTCACGCTCGTCTTCGCGCATCA
GGACATGGAGCAAGGACTCCTCTTCCTCAATAAGGCAGCCACCGCGGGCCACAAGGCGGCGGCATACGTGCTCGGCCTCC
TCCTCTACAAGTTCGATGATGCTCGCGCTACCGGGAAGAAGTACATTAGCCAAGTCGAGGATGATGGCAATGAGGCAGCG
ACCGGCGTTGGGGTCAAGAGGACCAACCGGGAGTGCCAACAGTACCGAAAGATCGTCGGGGACGTGATCCAGGAAGCGAC
ATGGAAGGTCGGAGGGCGACGCGGTAGGATGCTGGTGCTACCGGAGGATAGCCACCACTGCACAGCCACCGGCTGCGGCG
TGGAGTCGGGATGGGAAGGCTATGGAGTCTTTTGCAGTGATGATTGTAGGATCAAGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27258.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis