Browse Element(s) Details


Os.56168.1.S1_at

Description gb:AK109526.1
DB_XREF= gi:32994735
TID=Os.56168.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56168 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-G10, full insert sequence.
FL= gb:AK109526.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4038411/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40340OsAffx.15037.1.S1_at10/115+23621899..23622617hypothetical protein
LOC_Os05g40350OsAffx.27257.1.S1_at11/115+23624347..23624876hypothetical protein
LOC_Os05g40360OsAffx.27258.1.S1_at11/115+23626304..23627186hypothetical protein
LOC_Os05g40370NANA5+23638300..23640886hypothetical protein
LOC_Os05g40384Os.56168.1.S1_at11/115+23645362..23655166Cytochrome P450 family protein, expressed
LOC_Os05g40400NANA5+23655958..23656593Harpin-induced protein 1 containing protein, expressed
LOC_Os05g40410Os.8137.1.S1_at11/115+23660266..23664385expressed protein
LOC_Os05g40420Os.4718.1.S1_at11/115+23665550..236701992,3-bisphosphoglycerate-independent phosphoglycerate mutase, putative, expressed
LOC_Os05g40430OsAffx.15041.1.S1_at11/115+23671631..23672821F-box domain containing protein
LOC_Os05g40440NANA5+23673676..23677720retrotransposon protein, putative, LINE subclass
LOC_Os05g40450OsAffx.4575.1.S1_at11/115+23678583..23679797F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56168.1.S1_at--403--9051Chr05:23654601..23654625 (25 bp)
TGCAGGAAACGCTGCGGCTGTTCCC
LOC_Os05g40384
Os.56168.1.S1_at--148--1891Chr05:23654651..23654675 (25 bp)
ACGTTCCGGGACATGCAGTTGGGTA
LOC_Os05g40384
Os.56168.1.S1_at--953--8791Chr05:23654703..23654727 (25 bp)
TGTTCGTCCCGGTGTCCACCATGCA
LOC_Os05g40384
Os.56168.1.S1_at--1102--5151Chr05:23654805..23654829 (25 bp)
GCAAGCACCCGCAGGCGTCGTTCAT
LOC_Os05g40384
Os.56168.1.S1_at--620--9372Chr05:23654919..23654943 (25 bp)
TCGAGTTCACGCTCTCGCCGGAGTA
LOC_Os05g40384
Os.56168.1.S1_at--1158--7811Chr05:23655017..23655041 (25 bp)
GGTCAGGACGCCACGTCACAAGTTG
LOC_Os05g40384
Os.56168.1.S1_at--829--7091Chr05:23655031..23655055 (25 bp)
GTCACAAGTTGACACATCTACTGCA
LOC_Os05g40384
Os.56168.1.S1_at--835--9031Chr05:23655052..23655076 (25 bp)
TGCACCCGTGCATAGTTCTCATAAT
LOC_Os05g40384
Os.56168.1.S1_at--141--6731Chr05:23655066..23655090 (25 bp)
GTTCTCATAATTAATTGGCTTCTGT
LOC_Os05g40384
Os.56168.1.S1_at--374--10591Chr05:23655085..23655109 (25 bp)
TTCTGTAAACAGCTAGTAAGTCGTG
LOC_Os05g40384
Os.56168.1.S1_at--107--2491Chr05:23655142..23655166 (25 bp)
AACAGAGGATTACCATTTTACCAGC
LOC_Os05g40384
Target Sequence 
TGCAGGAAACGCTGCGGCTGTTCCCGCCGTCGTCGTTCGTGGTGCGGGAGACGTTCCGGGACATGCAGTTGGGTAGGCTG
CTGGCGCCCAAGGGCACCTACCTGTTCGTCCCGGTGTCCACCATGCACCACGACGTCGCCGCCTGGGGCCCGACGGCGAG
GCTGTTCGACCCGTCCCGCTTCCGCGACGGCGTGGCGGCGGCGTGCAAGCACCCGCAGGCGTCGTTCATGCCGTTCGGCC
TCGGCGCCCGCACCTGCCTCGGCCAGAACCTCGCGCTCGTCGAGGTCAAGACGCTCGTCGCCGTCGTCCTCGCCCGGTTC
GAGTTCACGCTCTCGCCGGAGTACAGGCACTCGCCGGCGTTCCGGCTCATCATCGAGCCGGAGTTCGGCCTCCGCCTCCG
CATCCGCCGCGCCGGCGGTCAGGACGCCACGTCACAAGTTGACACATCTACTGCACCCGTGCATAGTTCTCATAATTAAT
TGGCTTCTGTAAACAGCTAGTAAGTCGTGAACTGAAAAAAATACATCACACATACAGAGACAACAGAGGATTACCATTTT
ACCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56168.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis