Browse Element(s) Details


Os.8137.1.S1_at

Description gb:AK120343.1
DB_XREF= gi:37989966
TID=Os.8137.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8137 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013061L21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013061L21, full insert sequence.
FL= gb:AK120343.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4041011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40370NANA5+23638300..23640886hypothetical protein
LOC_Os05g40384Os.56168.1.S1_at11/115+23645362..23655166Cytochrome P450 family protein, expressed
LOC_Os05g40400NANA5+23655958..23656593Harpin-induced protein 1 containing protein, expressed
LOC_Os05g40410Os.8137.1.S1_at11/115+23660266..23664385expressed protein
LOC_Os05g40420Os.4718.1.S1_at11/115+23665550..236701992,3-bisphosphoglycerate-independent phosphoglycerate mutase, putative, expressed
LOC_Os05g40430OsAffx.15041.1.S1_at11/115+23671631..23672821F-box domain containing protein
LOC_Os05g40440NANA5+23673676..23677720retrotransposon protein, putative, LINE subclass
LOC_Os05g40450OsAffx.4575.1.S1_at11/115+23678583..23679797F-box domain containing protein
LOC_Os05g40460OsAffx.25007.2.S1_s_at10/115+23683289..23685670retrotransposon protein, putative, unclassified
LOC_Os05g40460OsAffx.25007.2.S1_at8/115+23683289..23685670retrotransposon protein, putative, unclassified
LOC_Os05g40460OsAffx.25007.1.S1_at6/115+23683289..23685670retrotransposon protein, putative, unclassified
LOC_Os05g40470NANA5+23686036..23687729retrotransposon protein, putative, unclassified
LOC_Os05g40480NANA5+23688447..23691779retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8137.1.S1_at--466--1611Chr05:23663263..23663287 (25 bp)
AGCTGATTCCAACGATTCATCTTCA
LOC_Os05g40410
Os.8137.1.S1_at--994--2951Chr05:23663897..23663921 (25 bp)
AAGGCCAGCGATTTGTGCAAGCAGA
LOC_Os05g40410
Os.8137.1.S1_at--154--391Chr05:23663969..23663993 (25 bp)
ATCACAGCGCTGTACTATGACGAAG
LOC_Os05g40410
Os.8137.1.S1_at--220--1851Chr05:23664000..23664024 (25 bp)
ACGAGATCTACACTGGAAACCGGCA
LOC_Os05g40410
Os.8137.1.S1_at--136--5191Chr05:23664022..23664046 (25 bp)
GCAAGGCCTCGTTCATGTGTGGTCG
LOC_Os05g40410
Os.8137.1.S1_at--1074--5811Chr05:23664051..23664075 (25 bp)
GACCGTGAATACTGCTTTTTGCCAA
LOC_Os05g40410
Os.8137.1.S1_at--633--51Chr05:23664101..23664125 (25 bp)
ATTGATTTAACGACTGCCTCAGGTG
LOC_Os05g40410
Os.8137.1.S1_at--706--9931Chr05:23664167..23664191 (25 bp)
TATTTCGGCGAATACTGGTCTCCTA
LOC_Os05g40410
Os.8137.1.S1_at--885--5611Chr05:23664275..23664299 (25 bp)
GATACCTTTCGGCTTAGTTTCATGT
LOC_Os05g40410
Os.8137.1.S1_at--400--7111Chr05:23664298..23664322 (25 bp)
GTCAGTTCTTAAACCTGTACGGCTG
LOC_Os05g40410
Os.8137.1.S1_at--1094--8751Chr05:23664326..23664350 (25 bp)
TGTACCTTCATGGTAGCCTCTATGC
LOC_Os05g40410
Target Sequence 
AGCTGATTCCAACGATTCATCTTCAGAAGAAAATGCTGGCTCAATAAACATCAGCAACATACTGACTGGGAAATGCTTGG
CCAAAATTAAGGCCAGCGATTTGTGCAAGCAGAAGAAAGCCTGGAAGTTCCAGAGTACAGCCTTGGAGGCCCTCGAGGAC
ATCACAGCGCTGTACTATGACGAAGAGCGTGACGAGATCTACACTGGAAACCGGCAAGGCCTCGTTCATGTGTGGTCGAA
TTGACCGTGAATACTGCTTTTTGCCAACANAGGTGTTGGTCATCTGTAATTGAATTGATTTAACGACTGCCTCAGGTGGT
GCCGGCCACGAAGAGGTCTGTGTTGAGGTGATTCATATTTATTTCGGCGAATACTGGTCTCCTACCATTCTAAGCCCCCC
ACATTTGTTGTAGAATTAACAATTGTTGTTAGTTTCACATAGACTGTAGCATTGGGGAGATGTTGATGATACCTTTCGGC
TTAGTTTCATGTCAGTTCTTAAACCTGTACGGCTGTAATGTACCTTCATGGTAGCCTCTATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8137.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis