Browse Element(s) Details


Os.4718.1.S1_at

Description gb:AK065541.1
DB_XREF= gi:32975559
TID=Os.4718.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4718 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013029A18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013029A18, full insert sequence.
FL= gb:AK065541.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4042011/112,3-bisphosphoglycerate-independent phosphoglycerate mutase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40370NANA5+23638300..23640886hypothetical protein
LOC_Os05g40384Os.56168.1.S1_at11/115+23645362..23655166Cytochrome P450 family protein, expressed
LOC_Os05g40400NANA5+23655958..23656593Harpin-induced protein 1 containing protein, expressed
LOC_Os05g40410Os.8137.1.S1_at11/115+23660266..23664385expressed protein
LOC_Os05g40420Os.4718.1.S1_at11/115+23665550..236701992,3-bisphosphoglycerate-independent phosphoglycerate mutase, putative, expressed
LOC_Os05g40430OsAffx.15041.1.S1_at11/115+23671631..23672821F-box domain containing protein
LOC_Os05g40440NANA5+23673676..23677720retrotransposon protein, putative, LINE subclass
LOC_Os05g40450OsAffx.4575.1.S1_at11/115+23678583..23679797F-box domain containing protein
LOC_Os05g40460OsAffx.25007.2.S1_s_at10/115+23683289..23685670retrotransposon protein, putative, unclassified
LOC_Os05g40460OsAffx.25007.2.S1_at8/115+23683289..23685670retrotransposon protein, putative, unclassified
LOC_Os05g40460OsAffx.25007.1.S1_at6/115+23683289..23685670retrotransposon protein, putative, unclassified
LOC_Os05g40470NANA5+23686036..23687729retrotransposon protein, putative, unclassified
LOC_Os05g40480NANA5+23688447..23691779retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g40490NANA5+23694944..23698700Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
GO:0046537molecular_function2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4718.1.S1_at--1033--4231Chr05:23666057..23666081 (25 bp)
CCGATCATGGCAACGCCGAGGATAT
LOC_Os05g40420
Os.4718.1.S1_at--1046--5351Chr05:23666029..23666053 (25 bp)
GAAGAGGAACAAATCCGGCCAGCCA
LOC_Os05g40420
Os.4718.1.S1_at--159--3931Chr05:23666014..23666038 (25 bp)
CGGCCAGCCACAGCTTGACAAGAAA
LOC_Os05g40420
Os.4718.1.S1_at--251--9571Chr05:23665843..23665984 (25 bp)
TCTTCAGCCAGTGCCAGTTGCCATT
LOC_Os05g40420
Os.4718.1.S1_at--337--31Chr05:23665821..23665845 (25 bp)
ATTGGAGGCCCTGGCCTACATTCTG
LOC_Os05g40420
Os.4718.1.S1_at--289--7391Chr05:23665794..23665818 (25 bp)
GTGAGATTCCGCAACGACGTGCAGA
LOC_Os05g40420
Os.4718.1.S1_at--329--6851Chr05:23665723..23665747 (25 bp)
GTTTGAGGCCCCTGCTGACTACGAG
LOC_Os05g40420
Os.4718.1.S1_at--1118--9931Chr05:23665704..23665728 (25 bp)
TACGAGCCAACCCTAATTGAAGTAG
LOC_Os05g40420
Os.4718.1.S1_at--739--7231Chr05:23665645..23665669 (25 bp)
GTCGCTGTGATTTTGCTATGGGTCA
LOC_Os05g40420
Os.4718.1.S1_at--430--8591Chr05:23665614..23665638 (25 bp)
TGGTCTCTGCGATGTTGAATACTCC
LOC_Os05g40420
Os.4718.1.S1_at--759--7171Chr05:23665576..23665600 (25 bp)
GTCTGCTGGAACCTACGAGGGTTTT
LOC_Os05g40420
Target Sequence 
CCGATCATGGCAACGCCGAGGATATGGTGAAGAGGAACAAATCCGGCCAGCCACAGCTTGACAAGAAAGGCGAAATCCAG
ATTCTTACCTCACACACTCTTCAGCCAGTGCCAGTTGCCATTGGAGGCCCTGGCCTACATTCTGGGGTGAGATTCCGCAA
CGACGTGCAGACCCCTGGCCTCGCCAACGTCGCCGCCACCGTGATGAACCTCCACGGGTTTGAGGCCCCTGCTGACTACG
AGCCAACCCTAATTGAAGTAGTTGACAAATAAATTAAATGTAAACAGCGGATTTTGTCGCTGTGATTTTGCTATGGGTCA
GAGAAATGGTCTCTGCGATGTTGAATACTCCGTTTTTATGAGCAGTCTGCTGGAACCTACGAGGGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4718.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis