Browse Element(s) Details


OsAffx.27283.3.S1_at

Description tigr:9633.m03960
TID=OsAffx.27283.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4218011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g42150Os.16010.1.S1_at11/115+24560400..24562711Indole-3-acetic acid-amido synthetase GH3.6, putative, expressed
LOC_Os05g42160NANA5+24564203..24564565hypothetical protein
LOC_Os05g42170NANA5+24575227..24575628transposon protein, putative, unclassified
LOC_Os05g42180OsAffx.27283.3.S1_at11/115+24580707..24582902hypothetical protein
LOC_Os05g42190Os.9320.1.S1_at11/115+24586462..24589916Flavoprotein wrbA, putative, expressed
LOC_Os05g42200OsAffx.27284.1.S1_at11/115+24591502..24592970expressed protein
LOC_Os05g42200OsAffx.27284.1.S1_s_at11/115+24591502..24592970expressed protein
LOC_Os05g42210Os.56528.1.S1_at11/115+24593567..24599401S-locus glycoprotein family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27283.3.S1_at--1141--911Chr05:24581248..24581272 (25 bp)
AGGCTTGTCACCGACACCGTACGAG
LOC_Os05g42180
OsAffx.27283.3.S1_at--703--2471Chr05:24581468..24581492 (25 bp)
AACACGGATCGCCTCCATGATCATC
LOC_Os05g42180
OsAffx.27283.3.S1_at--933--711Chr05:24581484..24581508 (25 bp)
ATGATCATCATCAGGACGCCGGCTC
LOC_Os05g42180
OsAffx.27283.3.S1_at--511--2751Chr05:24581555..24581579 (25 bp)
AAGAAACCACGGATCGAGGCGCCGT
LOC_Os05g42180
OsAffx.27283.3.S1_at--840--10511Chr05:24582105..24582284 (25 bp)
TTCACGATCAAGTTGCCTCTCTGAG
LOC_Os05g42180
OsAffx.27283.3.S1_at--961--8911Chr05:24582281..24582305 (25 bp)
TGAGCTCACCGTACCTGAGGTGTGG
LOC_Os05g42180
OsAffx.27283.3.S1_at--903--7471Chr05:24582300..24582324 (25 bp)
GTGTGGGCGCCCTGTGCAGCTACAA
LOC_Os05g42180
OsAffx.27283.3.S1_at--286--3911Chr05:24582789..24582813 (25 bp)
CTGGACTTGCGCAGCCGAGGCTTGT
LOC_Os05g42180
OsAffx.27283.3.S1_at--871--3611Chr05:24582816..24582840 (25 bp)
CTTGTTCCGGTTGCGAGCACTTATA
LOC_Os05g42180
OsAffx.27283.3.S1_at--737--9151Chr05:24582827..24582851 (25 bp)
TGCGAGCACTTATACTGTGGCCAGT
LOC_Os05g42180
OsAffx.27283.3.S1_at--783--4411Chr05:24582846..24582870 (25 bp)
GCCAGTGAGACTGCGACAGAGTTTT
LOC_Os05g42180
Target Sequence 
AGGCTTGTCACCGACACCGTACGAGGCGGCCGACAACCTGCAGCAGCAGCAATCGTTCCCCGGCGGCCACCACGTCGTCT
CCAACACGGATCGCCTCCATGATCATCATCAGGACGCCGGCTCGCCGTCGCCGGCGACGAGAAGCTCTCCTGGCTCGCCG
GCGGCAGCGAAGAAACCACGGATCGAGGCGCCGTCGCCGATGCCGACTTTCAAGGTGAGGAAAGAGAAGCTCGGGGACAG
AATCACTGCGCTCCAGCAACTCGTCTCGCCTTTTGGAAAGACGGATACCGCATCGGTTCTTCACGAGGCCATCGAATACA
TCAAGTTCCTTCACGATCAAGTTGCCTCTCTGAGCTCACCGTACCTGAGGTGTGGGCGCCCTGTGCAGCTACAACACCAA
CAGGGTTCCCATAAGGTGAATGGTAACTGTGAGGGGAAGCAGCTGGACTTGCGCAGCCGAGGCTTGTGCCTTGTTCCGGT
TGCGAGCACTTATACTGTGGCCAGTGAGACTGCGACAGAGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27283.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis