Browse Element(s) Details


OsAffx.27284.1.S1_at

Description tigr:9633.m03962
TID=OsAffx.27284.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to cyclin Ib - maize
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4220011/11expressed protein
LOC_Os05g414302/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g42170NANA5+24575227..24575628transposon protein, putative, unclassified
LOC_Os05g42180OsAffx.27283.3.S1_at11/115+24580707..24582902hypothetical protein
LOC_Os05g42190Os.9320.1.S1_at11/115+24586462..24589916Flavoprotein wrbA, putative, expressed
LOC_Os05g42200OsAffx.27284.1.S1_at11/115+24591502..24592970expressed protein
LOC_Os05g42200OsAffx.27284.1.S1_s_at11/115+24591502..24592970expressed protein
LOC_Os05g42210Os.56528.1.S1_at11/115+24593567..24599401S-locus glycoprotein family protein, expressed
LOC_Os05g42220Os.49510.1.S1_at10/115+24608048..24612274Leucine Rich Repeat family protein, expressed
LOC_Os05g42230Os.11180.1.S1_at11/115+24612998..24616146universal stress protein family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27284.1.S1_at--685--7551Chr05:24592255..24592380 (25 bp)
GGGCGAACAAGATCCCGGTCAGGAA
LOC_Os05g42200
OsAffx.27284.1.S1_at--558--6371Chr05:24592245..24592269 (25 bp)
GATCCCGGTCAGGAAGGAACCAGCT
LOC_Os05g42200
OsAffx.27284.1.S1_at--737--3952Chr05:24592240..24592264 (25 bp)
CGGTCAGGAAGGAACCAGCTCCGAA
LOC_Os05g42200
OsAffx.27284.1.S1_at--172--931Chr05:24592235..24592259 (25 bp)
AGGAAGGAACCAGCTCCGAAGCCGG
LOC_Os05g42200
OsAffx.27284.1.S1_at--320--2631Chr05:24592228..24592252 (25 bp)
AACCAGCTCCGAAGCCGGCCAAGAA
LOC_Os05g42200
OsAffx.27284.1.S1_at--844--8431Chr05:24592212..24592236 (25 bp)
GGCCAAGAAGGTCGTACCCCGTCTG
LOC_Os05g42200
OsAffx.27284.1.S1_at--680--3191Chr05:24592209..24592233 (25 bp)
CAAGAAGGTCGTACCCCGTCTGGAG
LOC_Os05g42200
OsAffx.27284.1.S1_at--1077--7791Chr05:24592203..24592227 (25 bp)
GGTCGTACCCCGTCTGGAGAATGCC
LOC_Os05g42200
OsAffx.27284.1.S1_at--537--9391Chr05:24592201..24592225 (25 bp)
TCGTACCCCGTCTGGAGAATGCCGC
LOC_Os05g42200
OsAffx.27284.1.S1_at--787--2451Chr05:24592145..24592169 (25 bp)
AACAAGAAGCCTTCGGAGTCGGAGG
LOC_Os05g42200
OsAffx.27284.1.S1_at--1013--3912Chr05:24592101..24592125 (25 bp)
CGGCGGCGGTTCAGCCCACAAGTAC
LOC_Os05g42200
Target Sequence 
GGGCGAACAAGATCCCGGTCAGGAAGGAACCAGCTCCGAAGCCGGCCAAGAAGGTCGTACCCCGTCTGGAGAATGCCGCC
AAGGCCAGCACCGGCGCCGGCGTCAACGAGAACAAGAAGCCTTCGGAGTCGGAGGGCGCCGGCAGCAGCGGCAGCGGCGG
CGGTTCAGCCCACAAGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27284.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis