Browse Element(s) Details


OsAffx.27284.1.S1_s_at

Description tigr:9633.m03962
TID=OsAffx.27284.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to cyclin Ib - maize
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4220011/11expressed protein
LOC_Os05g413903/11G2/mitotic-specific cyclin S13-6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g42170NANA5+24575227..24575628transposon protein, putative, unclassified
LOC_Os05g42180OsAffx.27283.3.S1_at11/115+24580707..24582902hypothetical protein
LOC_Os05g42190Os.9320.1.S1_at11/115+24586462..24589916Flavoprotein wrbA, putative, expressed
LOC_Os05g42200OsAffx.27284.1.S1_at11/115+24591502..24592970expressed protein
LOC_Os05g42200OsAffx.27284.1.S1_s_at11/115+24591502..24592970expressed protein
LOC_Os05g42210Os.56528.1.S1_at11/115+24593567..24599401S-locus glycoprotein family protein, expressed
LOC_Os05g42220Os.49510.1.S1_at10/115+24608048..24612274Leucine Rich Repeat family protein, expressed
LOC_Os05g42230Os.11180.1.S1_at11/115+24612998..24616146universal stress protein family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0001558biological_processregulation of cell growth
GO:0007049biological_processcell cycle
GO:0016538molecular_functioncyclin-dependent protein kinase regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27284.1.S1_s_at--1080--7191Chr05:24592064..24592088 (25 bp)
GTCGTGAACACGCTTAACAACTGTG
LOC_Os05g42200
OsAffx.27284.1.S1_s_at--869--4891Chr05:24592053..24592077 (25 bp)
GCTTAACAACTGTGCTTACTGCTCG
LOC_Os05g42200
OsAffx.27284.1.S1_s_at--626--10472Chr05:24158793..24158907 (25 bp)
TTACTGCTCGTTCCAAGCACGCGTG
LOC_Os05g41390
OsAffx.27284.1.S1_s_at--791--3232Chr05:24158898..24158919 (22 bp)
CAAGCACGCGTGTGGCATTACTGAA
LOC_Os05g41390
OsAffx.27284.1.S1_s_at--336--4672Chr05:24158903..24158929 (25 bp)
GCGTGTGGCATTACTGAAGCCAAAA
LOC_Os05g41390
OsAffx.27284.1.S1_s_at--544--5611Chr05:24591885..24591909 (25 bp)
GACAAGCTCGACAGCGACAACCAGA
LOC_Os05g42200
OsAffx.27284.1.S1_s_at--107--5651Chr05:24591879..24591900 (22 bp)
GACAGCGACAACCAGATGACATATA
LOC_Os05g42200
OsAffx.27284.1.S1_s_at--867--232Chr12:15128525..15128769 (25 bp)
ATATAATTGCCACATCATCGCCACG
NONE
OsAffx.27284.1.S1_s_at--1143--3291Chr05:24591709..24591733 (25 bp)
CACGTGGGACGGAGAACCTAGTCAA
LOC_Os05g42200
OsAffx.27284.1.S1_s_at--27--1171Chr05:24591690..24591714 (25 bp)
AGTCAAACCAGCCATTTAGGCGCAA
LOC_Os05g42200
OsAffx.27284.1.S1_s_at--1083--152Chr06:27043513..27043534 (22 bp)
ATTTAGGCGCAACGTCAGCCAAAAC
NONE
Target Sequence 
GTCGTGAACACGCTTAACAACTGTGCTTACTGCTCGTTCCAAGCACGCGTGTGGCATTACTGAAGCCAAAAGAAGTCGTC
GAGGACATCGACAAGCTCGACAGCGACAACCAGATGACATATATAATTGCCACATCATCGCCACGTCAATGCCACGTGGG
ACGGAGAACCTAGTCAAACCAGCCATTTAGGCGCAACGTCAGCCAAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27284.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis