Browse Element(s) Details


OsAffx.27317.1.S1_at

Description tigr:9633.m04245
TID=OsAffx.27317.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4526011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45220Os.51511.1.S1_at11/115+26166316..2616808950S ribosomal protein L20, putative, expressed
LOC_Os05g45230OsAffx.27315.1.S1_at11/115+26173688..26174546hypothetical protein
LOC_Os05g45240NANA5+26178012..26180497flavin monoxygenase-like protein floozy, putative
LOC_Os05g45250NANA5+26184282..26185055transposon protein, putative, unclassified
LOC_Os05g45260OsAffx.27317.1.S1_at11/115+26190033..26191248hypothetical protein
LOC_Os05g45270Os.53442.1.S1_at10/115+26193336..26196142ribosomal protein L9, N-terminal domain containing protein, expressed
LOC_Os05g45270OsAffx.4622.1.S1_at1/115+26193336..26196142ribosomal protein L9, N-terminal domain containing protein, expressed
LOC_Os05g45280Os.5747.1.S1_at9/115+26196261..26199588membrane protein, putative, expressed
LOC_Os05g45290OsAffx.15112.1.S1_at11/115+26201544..26202035hypothetical protein
LOC_Os05g45300Os.52229.1.S1_at11/115+26202553..26205166enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os05g45310Os.18326.1.S1_at11/115+26205668..26208715ER lumen protein retaining receptor, putative, expressed
LOC_Os05g45320Os.50603.1.S1_at11/115+26209089..26211365expressed protein
LOC_Os05g45320Os.36280.1.S1_at10/115+26209089..26211365expressed protein
LOC_Os05g45330NANA5+26212287..26213257expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27317.1.S1_at--880--6711Chr05:26191189..26191213 (25 bp)
GTTCGTTTGCGCCAATCCGCTTCTA
LOC_Os05g45260
OsAffx.27317.1.S1_at--447--4551Chr05:26191181..26191205 (25 bp)
GCGCCAATCCGCTTCTACTTTGGCT
LOC_Os05g45260
OsAffx.27317.1.S1_at--447--3711Chr05:26190491..26190512 (22 bp)
CTACCTCAGGCCTTTTTGATCCTAA
LOC_Os05g45260
OsAffx.27317.1.S1_at--556--8431Chr05:26190483..26190507 (25 bp)
GGCCTTTTTGATCCTAACAGTTTTG
LOC_Os05g45260
OsAffx.27317.1.S1_at--147--2491Chr05:26190468..26190492 (25 bp)
AACAGTTTTGGATCCTATTTGTCTT
LOC_Os05g45260
OsAffx.27317.1.S1_at--1126--10231Chr05:26190462..26190486 (25 bp)
TTTGGATCCTATTTGTCTTCGTATG
LOC_Os05g45260
OsAffx.27317.1.S1_at--709--211Chr05:26190452..26190476 (25 bp)
ATTTGTCTTCGTATGATTGTTCTCA
LOC_Os05g45260
OsAffx.27317.1.S1_at--408--731Chr05:26190440..26190464 (25 bp)
ATGATTGTTCTCATGCTTGGCGAGA
LOC_Os05g45260
OsAffx.27317.1.S1_at--816--3751Chr05:26190431..26190455 (25 bp)
CTCATGCTTGGCGAGAAGAGTGATG
LOC_Os05g45260
OsAffx.27317.1.S1_at--965--2411Chr05:26190406..26190430 (25 bp)
AAAATGTTGCCATCGTTTTCAAAGT
LOC_Os05g45260
OsAffx.27317.1.S1_at--228--4431Chr05:26190398..26190422 (25 bp)
GCCATCGTTTTCAAAGTAGCAAATA
LOC_Os05g45260
Target Sequence 
GTTCGTTTGCGCCAATCCGCTTCTACTTTGGCTCCGCCTACCTCAGGCCTTTTTGATCCTAACAGTTTTGGATCCTATTT
GTCTTCGTATGATTGTTCTCATGCTTGGCGAGAAGAGTGATGAAAATGTTGCCATCGTTTTCAAAGTAGCAAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27317.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis