Browse Element(s) Details


OsAffx.27373.1.S1_s_at

Description tigr:9633.m04562
TID=OsAffx.27373.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g487804/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48740NANA5+27852177..27852404expressed protein
LOC_Os05g48750OsAffx.4655.1.S1_x_at11/115+27852857..278560713-deoxy-D-manno-octulosonate cytidylyltransferase family protein, expressed
LOC_Os05g48750Os.7761.1.S1_at10/115+27852857..278560713-deoxy-D-manno-octulosonate cytidylyltransferase family protein, expressed
LOC_Os05g48760NANA5+27860752..27864700expressed protein
LOC_Os05g48770OsAffx.15156.1.S1_at11/115+27867784..27870239expressed protein
LOC_Os05g48770OsAffx.27374.1.S1_x_at2/115+27867784..27870239expressed protein
LOC_Os05g48770Os.17546.4.S1_x_at1/115+27867784..27870239expressed protein
LOC_Os05g48780OsAffx.27373.1.S1_at4/115+27872837..27873259hypothetical protein
LOC_Os05g48780OsAffx.27373.1.S1_s_at4/115+27872837..27873259hypothetical protein
LOC_Os05g48790Os.17546.1.S2_a_at11/115+27875073..27878768expressed protein
LOC_Os05g48790Os.17546.4.S1_x_at10/115+27875073..27878768expressed protein
LOC_Os05g48790OsAffx.27374.1.S1_x_at9/115+27875073..27878768expressed protein
LOC_Os05g48800Os.11501.1.S1_at11/115+27884293..27887656fiber protein Fb2, putative, expressed
LOC_Os05g48810Os.35463.1.S1_at11/115+27889125..27891336DnaJ domain containing protein, expressed
LOC_Os05g48820Os.6086.2.S1_x_at10/115+27892394..27903100DDT domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27373.1.S1_s_at--417--3732Chr05:27872656..27872680 (25 bp)
CTAAATACCCATATAACCAGCTCTC
NONE
OsAffx.27373.1.S1_s_at--311--4332Chr05:27872664..27872688 (25 bp)
CCATATAACCAGCTCTCCAATTGAT
NONE
OsAffx.27373.1.S1_s_at--337--7831Chr05:27872691..27872715 (25 bp)
GGATAACCAAACTCGTTACTCACTT
NONE
OsAffx.27373.1.S1_s_at--568--2391Chr05:27872699..27872723 (25 bp)
AAACTCGTTACTCACTTCAACGCAT
NONE
OsAffx.27373.1.S1_s_at--807--2591Chr05:27872717..27872741 (25 bp)
AACGCATCTCCATCTATATGCTCTA
NONE
OsAffx.27373.1.S1_s_at--897--10131Chr05:27872733..27872757 (25 bp)
TATGCTCTATTTCAAGTCTATCACA
NONE
OsAffx.27373.1.S1_s_at--881--3191Chr05:27872756..27872780 (25 bp)
CAATGTACTATTACCCATCTTCTTC
NONE
OsAffx.27373.1.S1_s_at--1045--5731Chr05:27872875..27872899 (25 bp)
GACTGGCAGGCCAAATGATGCCGGC
LOC_Os05g48780
OsAffx.27373.1.S1_s_at--939--9151Chr05:27872938..27872962 (25 bp)
TGCGCAGCTGCTGCCAGCGACAGTT
LOC_Os05g48780
OsAffx.27373.1.S1_s_at--924--2131Chr05:27872957..27872981 (25 bp)
ACAGTTGCGCGGATGGCAGACTCGA
LOC_Os05g48780
OsAffx.27373.1.S1_s_at--589--851Chr05:27872969..27872993 (25 bp)
ATGGCAGACTCGATGACGACAGCGG
LOC_Os05g48780
Target Sequence 
CTAAATACCCATATAACCAGCTCTCCAATTGATTTGGATAACCAAACTCGTTACTCACTTCAACGCATCTCCATCTATAT
GCTCTATTTCAAGTCTATCACAATGTACTATTACCCATCTTCTTCTTCCTCATTTTCTCCCTCCTCTTCCTCTTTTCTCC
CCCTGATGGCGACAGCAGCGGATGGCGACTGCGAGCAAGGCGGTGGCGATGACTGCAACGACTGGCAGGCCAAATGATGC
CGGCGGCGCCTGCGTGGATGGTGGGAAAGACGACACCGGCGCTGCGCAGCTGCTGCCAGCGACAGTTGCGCGGATGGCAG
ACTCGATGACGACAGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27373.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis