Browse Element(s) Details


OsAffx.27384.1.S1_at

Description tigr:9633.m04646
TID=OsAffx.27384.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4953011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49490Os.54816.1.S1_at6/115+28293453..28295669hypothetical protein
LOC_Os05g49500OsAffx.15167.1.S1_at10/115+28301306..28303614hypothetical protein
LOC_Os05g49500Os.54816.1.S1_at3/115+28301306..28303614hypothetical protein
LOC_Os05g49510OsAffx.27383.1.S1_at11/115+28305649..28306860hypothetical protein
LOC_Os05g49520OsAffx.15166.1.S1_at11/115+28308917..28314652CTP synthase family protein
LOC_Os05g49530OsAffx.27384.1.S1_at11/115+28317436..28318558F-box domain containing protein
LOC_Os05g49540OsAffx.19542.3.S1_x_at6/115+28320418..28333928retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g49540OsAffx.9949.1.S1_at1/115+28320418..28333928retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g49550OsAffx.19542.3.S1_x_at4/115+28334753..28340721retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g49550OsAffx.9949.1.S1_at1/115+28334753..28340721retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g49560Os.28943.1.S1_x_at4/115+28342813..28347464retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27384.1.S1_at--592--7631Chr05:28317861..28317885 (25 bp)
GGGACTACAAGGTGCTTCGCATCAC
LOC_Os05g49530
OsAffx.27384.1.S1_at--244--9851Chr05:28317866..28317890 (25 bp)
TACAAGGTGCTTCGCATCACCCACG
LOC_Os05g49530
OsAffx.27384.1.S1_at--1045--4451Chr05:28318049..28318073 (25 bp)
GCCTACTTCGTGCTGCGCGACGAAT
LOC_Os05g49530
OsAffx.27384.1.S1_at--523--4611Chr05:28318065..28318089 (25 bp)
GCGACGAATTCTTGCTCAGCGAGAC
LOC_Os05g49530
OsAffx.27384.1.S1_at--295--8071Chr05:28318129..28318153 (25 bp)
GGAGCAATGGCGACCCGAACTCGTC
LOC_Os05g49530
OsAffx.27384.1.S1_at--876--3331Chr05:28318340..28318364 (25 bp)
CACGGACGGCCATTCCGGTTGGACG
LOC_Os05g49530
OsAffx.27384.1.S1_at--550--3571Chr05:28318350..28318374 (25 bp)
CATTCCGGTTGGACGGAGAACGCGC
LOC_Os05g49530
OsAffx.27384.1.S1_at--998--10591Chr05:28318412..28318436 (25 bp)
TTCTGGGTGTGGGAGCGCCGTGTCA
LOC_Os05g49530
OsAffx.27384.1.S1_at--564--5411Chr05:28318471..28318495 (25 bp)
GAACACCGGCGGTCAAACGGACGTG
LOC_Os05g49530
OsAffx.27384.1.S1_at--56--4691Chr05:28318499..28318523 (25 bp)
GCGGAGGCCAATTGCGTCCATGTTG
LOC_Os05g49530
OsAffx.27384.1.S1_at--1104--871Chr05:28318503..28318527 (25 bp)
AGGCCAATTGCGTCCATGTTGGCGT
LOC_Os05g49530
Target Sequence 
GGGACTACAAGGTGCTTCGCATCACCCACGACGTAGCGCTGCAGCCGCGCGAGCGGCAGTACGTGGCCGTCGTCGACGGA
GTCGCCTACTTCGTGCTGCGCGACGAATTCTTGCTCAGCGAGACTGGCGGCGGCGACTGGATCACGGCGTTCGACGTGGA
GGCGGAGCAATGGCGACCCGAACTCGTCGGCGGCCCGCCGGAGACCTTCCACAACCGCCTCCGCGTCTCCCTGGCCGCAC
TGAGGGGCTCCTTGGTGGTGGCCCAAGACGACCACCAAGCTGGCACCCTGGACCTGTGGTTCCTCCTCGCCGGCGACGGC
GGCAAGGTGGGGCCGCAGCATTGGTCGAAGCTGTACACGGTGACCATGCCATACCACGGACGGCCATTCCGGTTGGACGG
AGAACGCGCGGAGCCGGTGGTGGTGCTCGACGACGGGAGGATCGTCTTCTGGGTGTGGGAGCGCCGTGTCAGTTCACGCG
GCGGCGTGATGCGGGTGTACGATCCGAACACCGGCGGTCAAACGGACGTGGCGGCGGAGGCCAATTGCGTCCATGTTGGC
GT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27384.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis