Browse Element(s) Details


OsAffx.27508.78.S1_s_at

Description gb:AK106331.1
DB_XREF= gi:32991540
TID=OsAffx.27508.78
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-F07, full insert sequence.
FL= gb:AK106331.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0551011/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05470Os.50607.1.S1_at11/118+2903293..2906194expressed protein
LOC_Os08g05470OsAffx.29046.1.S1_at11/118+2903293..2906194expressed protein
LOC_Os08g05480Os.56230.1.S1_at11/118+2912328..2914937F-box domain containing protein, expressed
LOC_Os08g05490Os.10261.1.S1_at11/118+2917873..2922169tyrosyl-tRNA synthetase family protein, expressed
LOC_Os08g05500OsAffx.31174.4.S1_x_at9/118+2924894..2926622retrotransposon protein, putative, unclassified
LOC_Os08g05500OsAffx.31174.5.S1_x_at7/118+2924894..2926622retrotransposon protein, putative, unclassified
LOC_Os08g05510OsAffx.27508.78.S1_s_at11/118+2928448..2933764myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os08g05520Os.49830.1.S1_at11/118+2942209..2945028Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27508.78.S1_s_at--535--4271Chr08:2931853..2931877 (25 bp)
CCTGTCTTGCCACCATCAATGGGAA
LOC_Os08g05510
OsAffx.27508.78.S1_s_at--332--7851Chr08:2931891..2931915 (25 bp)
GGTAGCTATGACTAAACAACTCCAG
LOC_Os08g05510
OsAffx.27508.78.S1_s_at--750--8031Chr08:2932000..2932024 (25 bp)
GGAGTCTCATCTTCAAGCACAGTTA
LOC_Os08g05510
OsAffx.27508.78.S1_s_at--860--5111Chr08:2932016..2932040 (25 bp)
GCACAGTTAATCTAGCACCACAAGT
LOC_Os08g05510
OsAffx.27508.78.S1_s_at--419--2111Chr08:2933371..2933391 (21 bp)
ACATGGACGGTTTCTTGAGGGCGCC
LOC_Os08g05510
OsAffx.27508.78.S1_s_at--1145--10751Chr08:2933381..2933405 (25 bp)
TTGAGGGCGCCCATGCTGTTCAGAC
LOC_Os08g05510
OsAffx.27508.78.S1_s_at--570--3531Chr08:2933392..2933416 (25 bp)
CATGCTGTTCAGACCAATTCCAAGA
LOC_Os08g05510
OsAffx.27508.78.S1_s_at--133--5732Chr11:886643..886662 (20 bp)
GACTCCTGCAACTGCAAGCATAGCT
NONE
OsAffx.27508.78.S1_s_at--246--6351Chr08:2933465..2933489 (25 bp)
GATCTGGAATTTCAAGCTAACCTGA
LOC_Os08g05510
OsAffx.27508.78.S1_s_at--124--4851Chr08:2933480..2933504 (25 bp)
GCTAACCTGACTGCATGTTCTAATG
LOC_Os08g05510
OsAffx.27508.78.S1_s_at--309--9511Chr08:2933498..2933522 (25 bp)
TCTAATGCATTATTCGCGAGTCCGA
LOC_Os08g05510
Target Sequence 
CCTGTCTTGCCACCATCAATGGGAAAATTACATGATATGGTAGCTATGACTAAACAACTCCAGAACAGCAGTTTGGAAGG
AGTCTCATCTTCAAGCACAGTTAATCTAGCACCACAAGTTGCAAGAGATCTTCCTCCCCCAATTCCATCTTTTAAAGCAA
CAAATGTAGATTCAAGTCTCAGCAAAATGAACCACATGGACGGTTTCTTGAGGGCGCCCATGCTGTTCAGACCAATTCCA
AGAATCGCTGAAGGGGCATCTTCATCGACTCCTGCAACTGCAAGCATAGCTGATCTGGAATTTCAAGCTAACCTGACTGC
ATGTTCTAATGCATTATTCGCGAGTCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27508.78.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis