Browse Element(s) Details


OsAffx.27510.2.S1_x_at

Description tigr:9634.m00791
TID=OsAffx.27510.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to gene_id:F2C19.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0850011/11Helix-loop-helix DNA-binding domain containing protein
LOC_Os09g250401/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08480Os.10925.1.S1_at11/116+4166231..4182563Type III restriction enzyme, res subunit family protein, expressed
LOC_Os06g08490Os.6257.1.S1_at11/116+4188087..4189564expressed protein
LOC_Os06g08500OsAffx.27510.2.S1_at11/116+4191208..4193417Helix-loop-helix DNA-binding domain containing protein
LOC_Os06g08500OsAffx.27510.2.S1_x_at11/116+4191208..4193417Helix-loop-helix DNA-binding domain containing protein
LOC_Os06g08510OsAffx.4769.1.S1_s_at11/116+4199932..4201852expressed protein
LOC_Os06g08510OsAffx.4769.1.S1_at11/116+4199932..4201852expressed protein
LOC_Os06g08510Os.37590.1.S1_at10/116+4199932..4201852expressed protein
LOC_Os06g08520NANA6+4204533..4205996transposon protein, putative, unclassified
LOC_Os06g08530Os.11350.1.S1_x_at11/116+4212191..4217589Ubiquitin carboxyl-terminal hydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27510.2.S1_x_at--112--5591Chr06:4192202..4192226 (25 bp)
GAAATCGCTGCAGGAGCTAGTCCCA
LOC_Os06g08500
OsAffx.27510.2.S1_x_at--584--3031Chr06:4192200..4192224 (25 bp)
AATCGCTGCAGGAGCTAGTCCCAAA
LOC_Os06g08500
OsAffx.27510.2.S1_x_at--140--4771Chr06:4192196..4192220 (25 bp)
GCTGCAGGAGCTAGTCCCAAACGCC
LOC_Os06g08500
OsAffx.27510.2.S1_x_at--1124--4711Chr06:4192190..4192211 (22 bp)
GCTAGTCCCAAACGCCAACAAGACG
LOC_Os06g08500
OsAffx.27510.2.S1_x_at--987--6032Chr09:14959697..14959721 (25 bp)
GAGATCATCGACTACGTCAAGTTCC
LOC_Os09g25040
OsAffx.27510.2.S1_x_at--610--5051Chr06:4191771..4191880 (25 bp)
GCAGCTCCAAGTCAAGGTTCTCAGC
LOC_Os06g08500
OsAffx.27510.2.S1_x_at--1009--7571Chr06:4191393..4191417 (25 bp)
GGGCTCTGTCTGATGCCGATCTCCC
LOC_Os06g08500
OsAffx.27510.2.S1_x_at--223--4131Chr06:4191290..4191314 (25 bp)
CGCAGACGATGCTCGATGCCGCCGG
LOC_Os06g08500
OsAffx.27510.2.S1_x_at--1137--3931Chr06:4191254..4191278 (25 bp)
CGGCGGCGATGTCTAACGGCGATGA
LOC_Os06g08500
OsAffx.27510.2.S1_x_at--282--751Chr06:4191246..4191270 (25 bp)
ATGTCTAACGGCGATGACCCACGGC
LOC_Os06g08500
OsAffx.27510.2.S1_x_at--341--3931Chr06:4191238..4191262 (25 bp)
CGGCGATGACCCACGGCACGCAAAG
LOC_Os06g08500
Target Sequence 
GAAATCGCTGCAGGAGCTAGTCCCAAACGCCAACAAGACGGACAAGGCGTCGATGCTGGACGAGATCATCGACTACGTCA
AGTTCCTGCAGCTCCAAGTCAAGGTTCTCAGCATGAGCCGGCTCGGCGGCGCCGCCGGCATGGCGCCGCTGGTGGCGAGC
ATGTCGTCGGAGGGGAACAGCAACGGGAGCAGCAATGGCGGCGGTGGCAAGGCGAGCAAGGGCGGCACCGGCGGCGAGGG
CGGCGGCGGCGGCGGAGGAGGAGGAGGAGGTGGCACCGGTGGTGGGATGCGGGTGACGGAGCAGCAGGTGGCGAAGATGA
TGGAGGAGGACATGGGCACGGCGATGCAGTACCTGCAGGGGAAGGGGCTCTGTCTGATGCCGATCTCCCTCGCCTCCGCC
ATCTCGTCGGCGACCTCATCGGCGTCGCTCCTCTCCCGCCCGTCCATCCGCCACGCCGGCGCGCCGCCGCAGACGATGCT
CGATGCCGCCGGCCCGACCTCGCCGGCGGCGATGTCTAACGGCGATGACCCACGGCACGCAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27510.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis