Browse Element(s) Details


OsAffx.27521.1.S1_at

Description tigr:9634.m00839
TID=OsAffx.27521.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0890011/11Ligand-gated ion channel family protein
LOC_Os06g0893011/11Ligand-gated ion channel family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08880Os.52182.1.S1_at10/116+4458008..4462883Receptor family ligand binding region containing protein, expressed
LOC_Os06g08890OsAffx.4774.1.S1_at11/116+4471701..4474022Ligand-gated ion channel family protein, expressed
LOC_Os06g08900OsAffx.27521.1.S1_at11/116+4480241..4486784Ligand-gated ion channel family protein
LOC_Os06g08910Os.27742.2.S1_a_at11/116+4488589..4492910Ligand-gated ion channel family protein, expressed
LOC_Os06g08910Os.27742.1.S1_at11/116+4488589..4492910Ligand-gated ion channel family protein, expressed
LOC_Os06g08910OsAffx.4776.1.S1_s_at2/116+4488589..4492910Ligand-gated ion channel family protein, expressed
LOC_Os06g08920OsAffx.27520.1.S1_at11/116+4496906..4498414hypothetical protein
LOC_Os06g08920OsAffx.21973.1.S1_at1/116+4496906..4498414hypothetical protein
LOC_Os06g08930OsAffx.27521.1.S1_at11/116+4499767..4501666Ligand-gated ion channel family protein
LOC_Os06g08940NANA6+4504108..4507416retrotransposon protein, putative, unclassified
LOC_Os06g08950NANA6+4508033..4514188retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006874biological_processcalcium ion homeostasis
GO:0009416biological_processresponse to light stimulus
GO:0005217molecular_functionintracellular ligand-gated ion channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27521.1.S1_at--390--10252Chr06:4500279..4500300 (22 bp)
TTTGTATTTCCTCTAGGTTCTCCAC
LOC_Os06g08930
OsAffx.27521.1.S1_at--792--1012Chr06:4500265..4500289 (25 bp)
AGGTTCTCCACTGGTGCATGATCTC
LOC_Os06g08930
OsAffx.27521.1.S1_at--410--4992Chr06:4500250..4500274 (25 bp)
GCATGATCTCTCTACAGCTATCTTG
LOC_Os06g08930
OsAffx.27521.1.S1_at--285--6872Chr06:4500181..4500205 (25 bp)
GTTTGGCTCATCTGAACAGTCCACA
LOC_Os06g08930
OsAffx.27521.1.S1_at--199--7272Chr06:4500163..4500187 (25 bp)
GTCCACAGGAGGTGATGCAAACCCT
LOC_Os06g08930
OsAffx.27521.1.S1_at--547--9532Chr06:4500106..4500130 (25 bp)
TCTCACACTCCAAAGTTTCTCTGGC
LOC_Os06g08930
OsAffx.27521.1.S1_at--496--412Chr06:4500072..4500096 (25 bp)
ATCAGTGGCTGCATCTCTGCTCTGA
LOC_Os06g08930
OsAffx.27521.1.S1_at--651--9092Chr06:4500055..4500079 (25 bp)
TGCTCTGATGCTCCTGATAAGCGTT
LOC_Os06g08930
OsAffx.27521.1.S1_at--648--252Chr06:4500026..4500050 (25 bp)
ATAGGGTAATTTGCGCCAAATGCGC
LOC_Os06g08930
OsAffx.27521.1.S1_at--20--2292Chr06:4500009..4500033 (25 bp)
AAATGCGCAAAGGAAGCTCGTGTTC
LOC_Os06g08930
OsAffx.27521.1.S1_at--491--3252Chr06:4499908..4499932 (25 bp)
CAACCCTGAACCTGATCAAGCTGTC
LOC_Os06g08930
Target Sequence 
TTTGTATTTCCTCTAGGTTCTCCACTGGTGCATGATCTCTCTACAGCTATCTTGAACCTTACAGGAGAGACTGAAGGTTC
AAAAATTGAAGAGAAGTGGTTTGGCTCATCTGAACAGTCCACAGGAGGTGATGCAAACCCTAGCAGCAGCAGCAGCAGNN
NTGACTCAAACCCTCTCACACTCCAAAGTTTCTCTGGCCTCTTCATCATCAGTGGCTGCATCTCTGCTCTGATGCTCCTG
ATAAGCGTTGNGAATAGGGTAATTTGCGCCAAATGCGCAAAGGAAGCTCGTGTTCATGATGTGGAGCATGGAGGCAGTAC
TAGTAGCAGTNCCACTGAACAATCAAGACCACTTCAGATTGTTNTTGACAGCAACCCTGAACCTGATCAAGCTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27521.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis