Browse Element(s) Details


OsAffx.27560.1.S1_at

Description tigr:9634.m01072
TID=OsAffx.27560.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1100011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10970Os.53163.1.S1_at11/116+5731122..5733055Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10970OsAffx.15364.2.S1_x_at1/116+5731122..5733055Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10980OsAffx.4795.1.S1_at11/116+5733508..5735154Xyloglucan fucosyltransferase family protein, expressed
LOC_Os06g10990Os.26715.1.S1_at11/116+5744189..5746210dnaK protein, expressed
LOC_Os06g11000OsAffx.27560.1.S1_at11/116+5756270..5757844hypothetical protein
LOC_Os06g11010OsAffx.27561.1.S1_at11/116+5758686..5760519Eukaryotic aspartyl protease family protein
LOC_Os06g11020OsAffx.15365.1.S1_at11/116+5772556..5776200Tic22, putative, expressed
LOC_Os06g11020Os.5159.1.S1_at5/116+5772556..5776200Tic22, putative, expressed
LOC_Os06g11030NANA6+5777929..5778228EF hand family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27560.1.S1_at--367--2111Chr06:5757756..5757780 (25 bp)
ACATGAGGATAGGTGCATCGTCGTC
LOC_Os06g11000
OsAffx.27560.1.S1_at--645--4711Chr06:5757728..5757752 (25 bp)
GCTGGAGTGCAAGCTCGAGTACACG
LOC_Os06g11000
OsAffx.27560.1.S1_at--719--7031Chr06:5757710..5757734 (25 bp)
GTACACGAGCTTGGCGTTGCTGTCA
LOC_Os06g11000
OsAffx.27560.1.S1_at--731--10691Chr06:5757694..5757718 (25 bp)
TTGCTGTCATGTCAGGAGACCACCC
LOC_Os06g11000
OsAffx.27560.1.S1_at--611--491Chr06:5757619..5757643 (25 bp)
ATCTGGCCTGTCAACCAGCGAGAGA
LOC_Os06g11000
OsAffx.27560.1.S1_at--111--8671Chr06:5757577..5757601 (25 bp)
TGTGTCTACGTGCTTGCCAGGCAGC
LOC_Os06g11000
OsAffx.27560.1.S1_at--291--8291Chr06:5757503..5757527 (25 bp)
GGCTTCGGTCGCACAATGGACGCAA
LOC_Os06g11000
OsAffx.27560.1.S1_at--116--8531Chr06:5757487..5757511 (25 bp)
TGGACGCAACAGCTTATTCGAGGTG
LOC_Os06g11000
OsAffx.27560.1.S1_at--600--5731Chr06:5757326..5757475 (25 bp)
GACTGTAATGAACCATGCGGCGTTG
LOC_Os06g11000
OsAffx.27560.1.S1_at--809--611Chr06:5757312..5757336 (25 bp)
ATGCGGCGTTGACACTGGCGACCAT
LOC_Os06g11000
OsAffx.27560.1.S1_at--841--431Chr06:5757149..5757173 (25 bp)
ATCTTCTTCAGTCCAGCGGCCAAAG
LOC_Os06g11000
Target Sequence 
ACATGAGGATAGGTGCATCGTCGTCGCAGCTGGAGTGCAAGCTCGAGTACACGAGCTTGGCGTTGCTGTCATGTCAGGAG
ACCACCCCGACGACCCCGACTCCCTCCTGCTGCGACGCTCTGCTCTACTCGCTCGACATCTGGCCTGTCAACCAGCGAGA
GAAAGGCCTCTGCTGCCTCTGTGTCTACGTGCTTGCCAGGCAGCCTTCCTTCGATCTTGCCACTACCTACATCACCTGCC
GCGGCAGCTACGCGGCTTCGGTCGCACAATGGACGCAACAGCTTATTCGAGGTGTTCCTCCCCACGACTGTAATGAACCA
TGCGGCGTTGACACTGGCGACCATCCGCCACCACTGCCCAGCGGCAAGAAGAATAAGACGAGGAGGAAGAAGCAGAAGCA
GCAGCTAGGAGTTGGGGTGATCATCGCCATCGTCGTCTGCTCTCTGGCCGCTGCCGGTCTGCTCGGATACTGCCTCTACC
ACATCTTCTTCAGTCCAGCGGCCAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27560.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis