Browse Element(s) Details


Os.5159.1.S1_at

Description gb:AK058792.1
DB_XREF= gi:32968810
TID=Os.5159.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5159 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-002-G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-002-G02, full insert sequence.
FL= gb:AK058792.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g110205/11Tic22, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11000OsAffx.27560.1.S1_at11/116+5756270..5757844hypothetical protein
LOC_Os06g11010OsAffx.27561.1.S1_at11/116+5758686..5760519Eukaryotic aspartyl protease family protein
LOC_Os06g11020OsAffx.15365.1.S1_at11/116+5772556..5776200Tic22, putative, expressed
LOC_Os06g11020Os.5159.1.S1_at5/116+5772556..5776200Tic22, putative, expressed
LOC_Os06g11030NANA6+5777929..5778228EF hand family protein
LOC_Os06g11040Os.27377.1.S1_at10/116+5783168..5787999expressed protein
LOC_Os06g11050OsAffx.15366.1.S1_at9/116+5790467..5794811Cyclin-dependent kinase inhibitor family protein
LOC_Os06g11050Os.54550.1.S1_at1/116+5790467..5794811Cyclin-dependent kinase inhibitor family protein
LOC_Os06g11060Os.18657.1.S1_at11/116+5799189..5799850expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009706cellular_componentchloroplast inner membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5159.1.S1_at--233--372Chr06:5772885..5772909 (25 bp)
ATAATTTTGTTCTTGCAGTGATACC
LOC_Os06g11020
Os.5159.1.S1_at--359--2091Chr06:5772845..5772869 (25 bp)
ACATACACTTGCTCACTTCAAATGC
LOC_Os06g11020
Os.5159.1.S1_at--273--6231Chr06:5772817..5772841 (25 bp)
GATGGCCAGCCAATCAATAGTGTCA
LOC_Os06g11020
Os.5159.1.S1_at--47--3111Chr06:5772802..5772826 (25 bp)
AATAGTGTCAAGTTGCTGCCTGAGC
LOC_Os06g11020
Os.5159.1.S1_at--54--4791Chr06:5772788..5772812 (25 bp)
GCTGCCTGAGCTTCTTTTTAATACT
LOC_Os06g11020
Os.5159.1.S1_at--480--411Chr06:5772534..5772558 (25 bp)
ATCAGTGTGTGTTCGGTGGTCTTTC
NONE
Os.5159.1.S1_at--490--9211Chr06:5772499..5772523 (25 bp)
TCCAAGTTTCCCTTATCTTTAGCCA
NONE
Os.5159.1.S1_at--541--10411Chr06:5772487..5772511 (25 bp)
TTATCTTTAGCCACCTGGACCGAAA
NONE
Os.5159.1.S1_at--1076--5751Chr06:5772460..5772484 (25 bp)
GACGTTCGTGTAATCATTTTGCCTT
NONE
Os.5159.1.S1_at--333--10391Chr06:5772444..5772468 (25 bp)
TTTTGCCTTGTCAATCCATGTTTTG
NONE
Os.5159.1.S1_at--500--572Chr06:5772431..5772455 (25 bp)
ATCCATGTTTTGCACTTGTTTCTAA
NONE
Target Sequence 
ATAATTTTGTTCTTGCAGTGATACCNCAGGGTTTGAGCACACATACACTTGCTCACTTCAAATGCTGTGATGGCCAGCCA
ATCAATAGTGTCAAGTTGCTGCCTGAGCTTCTTTTTAATACTTTCTTGCTAGTGGTTCTTGTAACAAAAAAGTTCAGGAT
TAAAGTGAAAAAATATGTGTGGTTTTTTCATTGTTTCAACCTTCAAACATCAATACAAGCTCCACTTGAAGCTGGCGAAG
TGTATGAGGCGCNAAATCATCTNTGTTGCAGGAAAATTATTGTTCCNCAGAAAAATTATTGTTATGTGNTAGATTNCAGT
CATAAAAGAAACNATAATTANCGTTGCCATGATCAGTGTGTGTTCGGTGGTCTTTCGGGGATAAAATCCAAGTTTCCCTT
ATCTTTAGCCACCTGGACCGAAAAGGACGTTCGTGTAATCATTTTGCCTTGTCAATCCATGTTTTGCACTTGTTTCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5159.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis