Browse Element(s) Details


Os.27377.1.S1_at

Description gb:AK071478.1
DB_XREF= gi:32981501
TID=Os.27377.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27377 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023092B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023092B08, full insert sequence.
FL= gb:AK071478.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1104010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11010OsAffx.27561.1.S1_at11/116+5758686..5760519Eukaryotic aspartyl protease family protein
LOC_Os06g11020OsAffx.15365.1.S1_at11/116+5772556..5776200Tic22, putative, expressed
LOC_Os06g11020Os.5159.1.S1_at5/116+5772556..5776200Tic22, putative, expressed
LOC_Os06g11030NANA6+5777929..5778228EF hand family protein
LOC_Os06g11040Os.27377.1.S1_at10/116+5783168..5787999expressed protein
LOC_Os06g11050OsAffx.15366.1.S1_at9/116+5790467..5794811Cyclin-dependent kinase inhibitor family protein
LOC_Os06g11050Os.54550.1.S1_at1/116+5790467..5794811Cyclin-dependent kinase inhibitor family protein
LOC_Os06g11060Os.18657.1.S1_at11/116+5799189..5799850expressed protein
LOC_Os06g11070Os.23461.1.A1_at11/116+5806277..5810130expressed protein
LOC_Os06g11070OsAffx.4796.1.S1_s_at11/116+5806277..5810130expressed protein
LOC_Os06g11080OsAffx.4797.1.S1_at11/116+5811592..5812001hypothetical protein
LOC_Os06g11090Os.49572.1.A1_at11/116+5812498..5814197esterase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27377.1.S1_at--366--3711Chr06:5783721..5783745 (25 bp)
CTAGGGATCCGGATTCTTTGATTGA
LOC_Os06g11040
Os.27377.1.S1_at--137--3211Chr06:5783653..5783677 (25 bp)
CAAGGAGTCCTTGGCCAAATTCTGT
LOC_Os06g11040
Os.27377.1.S1_at--1091--6851Chr06:5783513..5783537 (25 bp)
GTATTTTCGACGCTCAAGGCTATAA
LOC_Os06g11040
Os.27377.1.S1_at--1065--8291Chr06:5783496..5783520 (25 bp)
GGCTATAATTTGTCTGCTGCAACTG
LOC_Os06g11040
Os.27377.1.S1_at--40--691Chr06:5783434..5783458 (25 bp)
ATGACTCTGAGCAAGCTTTCTCCTA
LOC_Os06g11040
Os.27377.1.S1_at--293--4891Chr06:5783420..5783444 (25 bp)
GCTTTCTCCTATGTAAGTTTCCTTG
LOC_Os06g11040
Os.27377.1.S1_at--696--6051Chr06:5783396..5783420 (25 bp)
GAGATTGACTCACCTGCAATTTCTT
LOC_Os06g11040
Os.27377.1.S1_at--855--3111Chr06:5783379..5783403 (25 bp)
AATTTCTTTTTTGCACCGATGACTG
LOC_Os06g11040
Os.27377.1.S1_at--805--7711Chr06:5783261..5783285 (25 bp)
GGTGTGCACTATTATGGCCCTAAAT
LOC_Os06g11040
Os.27377.1.S1_at--573--2251Chr06:5783240..5783264 (25 bp)
AAATTATCTATTTTTGTGCCCCATA
LOC_Os06g11040
Os.27377.1.S1_at--860--431NONE
ATCTTCACGCTCTCTCTTTATAAAT
NONE
Target Sequence 
CTAGGGATCCGGATTCTTTGATTGATGAACAGAGGCGACAACTATCCTATCCACCCAGCATGGAGCCTCAAGGAGTCCTT
GGCCAAATTCTGTTTGATGTTTGTGTTCCGAAGAACGTTGAAGGATGGGACATCAAACCAACAGTGTCCCCAAACGGACG
GCCAACATTGGCTTCTGCGCGGCAACTCGGCCCTTTCAATCCCATCAAGTATTTTCGACGCTCAAGGCTATAATTTGTCT
GCTGCAACTGTGAGTTTTGTGTACATAACGGAGGCAAGATGTCTAATATGACTCTGAGCAAGCTTTCTCCTATGTAAGTT
TCCTTGAGATTGACTCACCTGCAATTTCTTTTTTGCACCGATGACTGTACATATGTTGTGTATAGTTATACTAGTGGATA
TATTAGAAGGGGCCTTCTAGGTTGGGATGGTAAGGTGTATACTAACAGTGTATAGGGGAAGGTGTGCACTATTATGGCCC
TAAATTATCTATTTTTGTGCCCCATAGTCATATGATCTAATCTAATTATGAGAACTATTTATCTTCACGCTCTCTCTTTA
TAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27377.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis