Browse Element(s) Details


OsAffx.15365.1.S1_at

Description tigr:9634.m01074
TID=OsAffx.15365.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to Tic22
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1102011/11Tic22, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11000OsAffx.27560.1.S1_at11/116+5756270..5757844hypothetical protein
LOC_Os06g11010OsAffx.27561.1.S1_at11/116+5758686..5760519Eukaryotic aspartyl protease family protein
LOC_Os06g11020OsAffx.15365.1.S1_at11/116+5772556..5776200Tic22, putative, expressed
LOC_Os06g11020Os.5159.1.S1_at5/116+5772556..5776200Tic22, putative, expressed
LOC_Os06g11030NANA6+5777929..5778228EF hand family protein
LOC_Os06g11040Os.27377.1.S1_at10/116+5783168..5787999expressed protein
LOC_Os06g11050OsAffx.15366.1.S1_at9/116+5790467..5794811Cyclin-dependent kinase inhibitor family protein
LOC_Os06g11050Os.54550.1.S1_at1/116+5790467..5794811Cyclin-dependent kinase inhibitor family protein
LOC_Os06g11060Os.18657.1.S1_at11/116+5799189..5799850expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009706cellular_componentchloroplast inner membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15365.1.S1_at--228--3751Chr06:5775614..5775723 (25 bp)
CTCACCCACGTGAGGATGCGGCAGC
LOC_Os06g11020
OsAffx.15365.1.S1_at--758--2871Chr06:5775568..5775592 (25 bp)
AAGTGGTGCCGATTACGCTTGATCA
LOC_Os06g11020
OsAffx.15365.1.S1_at--451--9951Chr06:5775117..5775579 (25 bp)
TACGCTTGATCAGGTTTACATGTTG
LOC_Os06g11020
OsAffx.15365.1.S1_at--559--8331Chr06:5775090..5775114 (25 bp)
GGCTGAAGGTATTGCATTTCGGTTC
LOC_Os06g11020
OsAffx.15365.1.S1_at--769--11Chr06:5775080..5775104 (25 bp)
ATTGCATTTCGGTTCTTACCTGACC
LOC_Os06g11020
OsAffx.15365.1.S1_at--1132--3651Chr06:5775066..5775090 (25 bp)
CTTACCTGACCCTCTTCAAATTAAG
LOC_Os06g11020
OsAffx.15365.1.S1_at--349--9911Chr06:5774224..5774248 (25 bp)
TACTCATGTCTGTATTATTTACTGA
LOC_Os06g11020
OsAffx.15365.1.S1_at--585--3591Chr06:5774178..5774202 (25 bp)
CATTGAGACATACCCTTTGCGATTA
LOC_Os06g11020
OsAffx.15365.1.S1_at--994--5391Chr06:5773344..5773368 (25 bp)
GAAGCGTTACTGTCCGATATATTTT
LOC_Os06g11020
OsAffx.15365.1.S1_at--994--8991Chr06:5773271..5773344 (25 bp)
TCAAAAGGTCTTCACCATTTTCGCC
LOC_Os06g11020
OsAffx.15365.1.S1_at--672--171Chr06:5773255..5773279 (25 bp)
ATTTTCGCCTTCTTAGCTCAGGAGG
LOC_Os06g11020
Target Sequence 
CTCACCCACGTGAGGATGCGGCAGCCGGTGGTAGGGAGAGGGGCAAAAGTGGTGCCGATTACGCTTGATCAGGTTTACAT
GTTGAAGGCTGAAGGTATTGCATTTCGGTTCTTACCTGACCCTCTTCAAATTAAGAATGCGTTGGAGGTAATACTCATGT
CTGTATTATTTACTGAAAAATATACTTTTATGGAAAGCATTGAGACATACCCTTTGCGATTATTAAATTCAGACCTATTG
GTTGTTAAGAAACAGAAGAAGCGTTACTGTCCGATATATTTTCAAAAGGTCTTCACCATTTTCGCCTTCTTAGCTCAGGA
GG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15365.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis