Browse Element(s) Details


Os.18657.1.S1_at

Description gb:AK106922.1
DB_XREF= gi:32992131
TID=Os.18657.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18657 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-119-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-B06, full insert sequence.
FL= gb:AK106922.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1106011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11020OsAffx.15365.1.S1_at11/116+5772556..5776200Tic22, putative, expressed
LOC_Os06g11020Os.5159.1.S1_at5/116+5772556..5776200Tic22, putative, expressed
LOC_Os06g11030NANA6+5777929..5778228EF hand family protein
LOC_Os06g11040Os.27377.1.S1_at10/116+5783168..5787999expressed protein
LOC_Os06g11050OsAffx.15366.1.S1_at9/116+5790467..5794811Cyclin-dependent kinase inhibitor family protein
LOC_Os06g11050Os.54550.1.S1_at1/116+5790467..5794811Cyclin-dependent kinase inhibitor family protein
LOC_Os06g11060Os.18657.1.S1_at11/116+5799189..5799850expressed protein
LOC_Os06g11070Os.23461.1.A1_at11/116+5806277..5810130expressed protein
LOC_Os06g11070OsAffx.4796.1.S1_s_at11/116+5806277..5810130expressed protein
LOC_Os06g11080OsAffx.4797.1.S1_at11/116+5811592..5812001hypothetical protein
LOC_Os06g11090Os.49572.1.A1_at11/116+5812498..5814197esterase, putative, expressed
LOC_Os06g11100OsAffx.22063.1.S1_at1/116+5816259..5819852retrotransposon protein, putative, unclassified
LOC_Os06g11110OsAffx.20729.1.S1_x_at4/116+5820541..5826468transposon protein, putative, unclassified
LOC_Os06g11110OsAffx.21171.4.S1_x_at2/116+5820541..5826468transposon protein, putative, unclassified
LOC_Os06g11110OsAffx.21171.3.S1_x_at1/116+5820541..5826468transposon protein, putative, unclassified
LOC_Os06g11110OsAffx.2022.1.S1_at1/116+5820541..5826468transposon protein, putative, unclassified
LOC_Os06g11110OsAffx.21171.4.S1_at1/116+5820541..5826468transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18657.1.S1_at--614--3771Chr06:5799322..5799346 (25 bp)
CTGGGTTTCCTGAAGAACGCGGCGA
LOC_Os06g11060
Os.18657.1.S1_at--754--4651Chr06:5799386..5799410 (25 bp)
GCGTCCTCATGATGAGCCTGCGGAC
LOC_Os06g11060
Os.18657.1.S1_at--5--6271Chr06:5799655..5799679 (25 bp)
GATGTGTGATCGCTGCGTATTTACT
LOC_Os06g11060
Os.18657.1.S1_at--328--191Chr06:5799673..5799697 (25 bp)
ATTTACTTGTCAGATCTTTGCCCCA
LOC_Os06g11060
Os.18657.1.S1_at--217--851Chr06:5799697..5799721 (25 bp)
ATGGCGTCTAGGCTTGCACGCGATT
LOC_Os06g11060
Os.18657.1.S1_at--753--5091Chr06:5799712..5799736 (25 bp)
GCACGCGATTTGTTCGTCGAAATGC
LOC_Os06g11060
Os.18657.1.S1_at--352--5591Chr06:5799730..5799754 (25 bp)
GAAATGCCGCACAGGCTGTGAGCCT
LOC_Os06g11060
Os.18657.1.S1_at--564--3891Chr06:5799745..5799769 (25 bp)
CTGTGAGCCTGTACCGAACCGTGAA
LOC_Os06g11060
Os.18657.1.S1_at--109--5451Chr06:5799760..5799784 (25 bp)
GAACCGTGAACTCGCTGTTTGAGGC
LOC_Os06g11060
Os.18657.1.S1_at--532--4131Chr06:5799790..5799814 (25 bp)
CGCATTTTTGTTGTTGGACTGATAA
LOC_Os06g11060
Os.18657.1.S1_at--757--5751Chr06:5799815..5799839 (25 bp)
GACGTCCTATAATTCTGAGATGCCT
LOC_Os06g11060
Target Sequence 
CTGGGTTTCCTGAAGAACGCGGCGAAGCACAAGCACGGGTTCGTGCAGCTGCTCCTGATGGGGAGCGTCCTCATGATGAG
CCTGCGGACCCTGNGCCAGAAGCACCGCCGCCGCGACCTCATCTACGANNAACGCCGACCTCCGCCGCGAGCACGACGAC
CTATCCCTCCGGATGCGCGACGTCCANGACGCCCTGCGCCGNGAGGCCGACGCCGACGAGTCCGGCGCGCTCGCCTCCCA
TCTCCGCCGCATCTTCGCCGCCCACCCCGCCTCCNACCGATGACAAGTNGCTCGTTGCCCGGCTAATCTCCGCCGCACTC
TCAGTCCTCCCCCGCGATGTGTGATCGCTGCGTATTTACTTGTCAGATCTTTGCCCCATGGCGTCTAGGCTTGCACGCGA
TTTGTTCGTCGAAATGCCGCACAGGCTGTGAGCCTGTACCGAACCGTGAACTCGCTGTTTGAGGCAGAAACGCATTTTTG
TTGTTGGACTGATAAGACGTCCTATAATTCTGAGATGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18657.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis