Browse Element(s) Details


OsAffx.27601.1.S1_at

Description tigr:9634.m01300
TID=OsAffx.27601.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to At2g04690F28I8.27
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1310011/11CREG1 protein precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13060OsAffx.4821.1.S1_at11/116+7159388..7163157Chaperone protein dnaJ 16, putative, expressed
LOC_Os06g13070OsAffx.15402.1.S1_at11/116+7169698..7171450HhH-GPD superfamily base excision DNA repair protein
LOC_Os06g13080OsAffx.4822.1.S1_at11/116+7180703..7182460U-box domain containing protein, expressed
LOC_Os06g13090NANA6+7185602..7187077U-box domain containing protein, expressed
LOC_Os06g13100OsAffx.27601.1.S1_at11/116+7187425..7190424CREG1 protein precursor, putative, expressed
LOC_Os06g13100Os.15218.1.S1_at11/116+7187425..7190424CREG1 protein precursor, putative, expressed
LOC_Os06g13110OsAffx.27658.1.S1_at8/116+7195592..7200418retrotransposon protein, putative, unclassified
LOC_Os06g13120OsAffx.15403.1.S1_at11/116+7200592..7202995hypothetical protein
LOC_Os06g13130NANA6+7204228..7204818hypothetical protein
LOC_Os06g13140OsAffx.27602.1.S1_at10/116+7208517..7211491transducin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27601.1.S1_at--592--2011Chr06:7188815..7188839 (25 bp)
ACTCTTACTGGAAAGGTACAGACAA
LOC_Os06g13100
OsAffx.27601.1.S1_at--35--5631Chr06:7188795..7188819 (25 bp)
GACAAATTGCATCCATGGTACCATG
LOC_Os06g13100
OsAffx.27601.1.S1_at--99--7851Chr06:7188779..7188803 (25 bp)
GGTACCATGATTATTCACTTGCTGT
LOC_Os06g13100
OsAffx.27601.1.S1_at--1044--3311Chr06:7188764..7188788 (25 bp)
CACTTGCTGTTTATCTATCTATTTC
LOC_Os06g13100
OsAffx.27601.1.S1_at--231--451Chr06:7188748..7188772 (25 bp)
ATCTATTTCTATTTTGCTTTGGTAG
LOC_Os06g13100
OsAffx.27601.1.S1_at--74--4891Chr06:7188733..7188757 (25 bp)
GCTTTGGTAGTGACTGATCTGGTTA
LOC_Os06g13100
OsAffx.27601.1.S1_at--725--7371Chr06:7188724..7188748 (25 bp)
GTGACTGATCTGGTTATCTTCTTAT
LOC_Os06g13100
OsAffx.27601.1.S1_at--424--6411Chr06:7188718..7188742 (25 bp)
GATCTGGTTATCTTCTTATATCTAT
LOC_Os06g13100
OsAffx.27601.1.S1_at--954--171Chr06:7188695..7188719 (25 bp)
ATTTTTCTTGGTGCTGACTGGTCTA
LOC_Os06g13100
OsAffx.27601.1.S1_at--138--7791Chr06:7188686..7188710 (25 bp)
GGTGCTGACTGGTCTAAGAATGTAC
LOC_Os06g13100
OsAffx.27601.1.S1_at--399--3151Chr06:7188640..7188664 (25 bp)
AATTCATACTTAATTCAGCTTGAAG
LOC_Os06g13100
Target Sequence 
ACTCTTACTGGAAAGGTACAGACAAATTGCATCCATGGTACCATGATTATTCACTTGCTGTTTATCTATCTATTTCTATT
TTGCTTTGGTAGTGACTGATCTGGTTATCTTCTTATATCTATTTTTCTTGGTGCTGACTGGTCTAAGAATGTACAGTAGT
TAATTTCTTTTTATTAATTCATACTTAATTCAGCTTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27601.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis