Browse Element(s) Details


OsAffx.27609.1.S1_at

Description tigr:9634.m01325
TID=OsAffx.27609.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1334010/11hypothetical protein
LOC_Os10g351801/11ABC-2 type transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13290NANA6+7310746..7312078retrotransposon protein, putative, unclassified
LOC_Os06g13300OsAffx.4826.1.S1_at11/116+7314027..7316138hypothetical protein
LOC_Os06g13310OsAffx.15405.1.S1_at11/116+7317600..7322202SAM dependent carboxyl methyltransferase family protein
LOC_Os06g13320Os.52735.1.S1_at11/116+7324615..7326450Protein kinase domain containing protein, expressed
LOC_Os06g13320OsAffx.24030.1.S1_x_at4/116+7324615..7326450Protein kinase domain containing protein, expressed
LOC_Os06g13330Os.24485.1.A1_at2/116+7332279..7334742hypothetical protein
LOC_Os06g13340OsAffx.27609.1.S1_at10/116+7337077..7338728hypothetical protein
LOC_Os06g13350OsAffx.15406.1.S1_at11/116+7341145..7343868SAM dependent carboxyl methyltransferase family protein
LOC_Os06g13360NANA6+7344324..7348355retrotransposon protein, putative, unclassified
LOC_Os06g13370OsAffx.25936.2.S1_x_at1/116+7362153..7365160transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g13370OsAffx.25936.5.S1_x_at1/116+7362153..7365160transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0010025biological_processwax biosynthesis
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27609.1.S1_at--1000--4731Chr06:7337139..7337163 (25 bp)
GCTGTATGAGCTAGGGCTTCGGCAT
LOC_Os06g13340
OsAffx.27609.1.S1_at--131--8511Chr06:7337178..7337202 (25 bp)
TGGCACTGTTCGAGGGCTCCTTGCC
LOC_Os06g13340
OsAffx.27609.1.S1_at--1113--10691Chr06:7337198..7337222 (25 bp)
TTGCCGCAGGTCTCACACAAATAGT
LOC_Os06g13340
OsAffx.27609.1.S1_at--1115--6451Chr06:7337223..7337247 (25 bp)
GATACAATCCACCTTGTTCAAGCAC
LOC_Os06g13340
OsAffx.27609.1.S1_at--738--1731Chr06:7337233..7337257 (25 bp)
ACCTTGTTCAAGCACCTCAATTGGT
LOC_Os06g13340
OsAffx.27609.1.S1_at--226--1752Chr06:7337246..7337270 (25 bp)
ACCTCAATTGGTGGAAGCTTCCGAT
LOC_Os06g13340
OsAffx.27609.1.S1_at--851--8511Chr06:7337257..7337281 (25 bp)
TGGAAGCTTCCGATGCCGCGTGACA
LOC_Os06g13340
OsAffx.27609.1.S1_at--1046--4511Chr06:7337271..7337295 (25 bp)
GCCGCGTGACATCCGTATGATGCTT
LOC_Os06g13340
OsAffx.27609.1.S1_at--929--3652Chr06:7337293..7337317 (25 bp)
CTTTTGATGCAGGAGGACGACAGCT
LOC_Os06g13340
OsAffx.27609.1.S1_at--1019--951NONE
AGGACGACAGCTGGTTGTTGCTGTT
NONE
OsAffx.27609.1.S1_at--674--7912Chr10:18456923..18457103 (25 bp)
GGTTGTTGCTGTTGTCAAAAATGAT
LOC_Os10g35180
Target Sequence 
GCTGTATGAGCTAGGGCTTCGGCATGCTGGTGTTGGGGGTGGCACTGTTCGAGGGCTCCTTGCCGCAGGTCTCACACAAA
TAGTGATACAATCCACCTTGTTCAAGCACCTCAATTGGTGGAAGCTTCCGATGCCGCGTGACATCCGTATGATGCTTTTG
ATGCAGGAGGACGACAGCTGGTTGTTGCTGTTGTCAAAAATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27609.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis