Browse Element(s) Details


OsAffx.27613.1.S1_at

Description tigr:9634.m01339
TID=OsAffx.27613.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1348011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13450OsAffx.15408.1.S1_at10/116+7400128..7403268Cys/Met metabolism PLP-dependent enzyme family protein, expressed
LOC_Os06g13460Os.52964.1.S1_at11/116+7405038..7407610Jasmonate O-methyltransferase, putative, expressed
LOC_Os06g13470OsAffx.27612.1.S1_at11/116+7416745..7421148SAM dependent carboxyl methyltransferase family protein
LOC_Os06g13480OsAffx.27613.1.S1_at11/116+7422690..7423046hypothetical protein
LOC_Os06g13490OsAffx.15409.1.S1_at11/116+7428731..7432792SAM dependent carboxyl methyltransferase family protein
LOC_Os06g13500NANA6+7438413..7442219retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27613.1.S1_at--570--7871Chr06:7422740..7422764 (25 bp)
GGTTTTCCAGAGGAGACCTCGGTGC
LOC_Os06g13480
OsAffx.27613.1.S1_at--266--10291Chr06:7422743..7422767 (25 bp)
TTTCCAGAGGAGACCTCGGTGCGGC
LOC_Os06g13480
OsAffx.27613.1.S1_at--955--6091Chr06:7422774..7422798 (25 bp)
GAGTGTCGGGTCTGCGGGTTCCAGC
LOC_Os06g13480
OsAffx.27613.1.S1_at--741--4171Chr06:7422800..7422824 (25 bp)
CCCAAATCTAGCGACGTGGGAGGCG
LOC_Os06g13480
OsAffx.27613.1.S1_at--1097--4991Chr06:7422837..7422861 (25 bp)
GCAGTGGTGGTCAAGGCCGCGCGTG
LOC_Os06g13480
OsAffx.27613.1.S1_at--398--4151Chr06:7422856..7422880 (25 bp)
CGCGTGCCAGCGGAGGTTGTTGGGA
LOC_Os06g13480
OsAffx.27613.1.S1_at--312--3251Chr06:7422893..7422917 (25 bp)
CAAGCGTTGGACAGCAGCAGTGGCT
LOC_Os06g13480
OsAffx.27613.1.S1_at--838--5051Chr06:7422906..7422930 (25 bp)
GCAGCAGTGGCTGAACCCGAGATTG
LOC_Os06g13480
OsAffx.27613.1.S1_at--482--7511Chr06:7422912..7422936 (25 bp)
GTGGCTGAACCCGAGATTGGCATGC
LOC_Os06g13480
OsAffx.27613.1.S1_at--258--5451Chr06:7422918..7422942 (25 bp)
GAACCCGAGATTGGCATGCGGCAGC
LOC_Os06g13480
OsAffx.27613.1.S1_at--1093--9391Chr06:7422950..7422974 (25 bp)
TCGGGAGGCGGTGTCACAGCGGGTC
LOC_Os06g13480
Target Sequence 
GGTTTTCCAGAGGAGACCTCGGTGCGGCGGAGGGGAGTGTCGGGTCTGCGGGTTCCAGCCCCCAAATCTAGCGACGTGGG
AGGCGGAGGGGCCATGGGCAGTGGTGGTCAAGGCCGCGCGTGCCAGCGGAGGTTGTTGGGAGGGATGGAGGCGCAAGCGT
TGGACAGCAGCAGTGGCTGAACCCGAGATTGGCATGCGGCAGCGGAGGGGTCGGGAGGCGGTGTCACAGCGGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27613.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis