Browse Element(s) Details


OsAffx.27637.1.S1_at

Description tigr:9634.m01451
TID=OsAffx.27637.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g145301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g14510Os.4697.1.S1_at11/116+8151445..8158386Glucose-6-phosphate isomerase, cytosolic B, putative, expressed
LOC_Os06g14510Os.57457.1.S1_x_at2/116+8151445..8158386Glucose-6-phosphate isomerase, cytosolic B, putative, expressed
LOC_Os06g14520NANA6+8162528..8162758hypothetical protein
LOC_Os06g14530Os.12298.1.S1_at11/116+8175720..8176754expressed protein
LOC_Os06g14530OsAffx.27637.1.S1_at1/116+8175720..8176754expressed protein
LOC_Os06g14540Os.51106.1.S1_at11/116+8177992..8183623Endoglucanase 1 precursor, putative, expressed
LOC_Os06g14550Os.12088.1.S1_at11/116+8193484..8197031Signal recognition particle 9 kDa protein, putative, expressed
LOC_Os06g14560OsAffx.15425.1.S1_at11/116+8198009..8199201hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27637.1.S1_at--540--6011Chr06:8176014..8176038 (25 bp)
GAGAGGGCCCCGCTTGCGGCGCGAC
LOC_Os06g14530
OsAffx.27637.1.S1_at--722--9451NONE
TCGGCGGCTGCGGTTCGGATCGGGA
NONE
OsAffx.27637.1.S1_at--1090--7891NONE
GGTTCGGATCGGGAGGCTTTTGTTG
NONE
OsAffx.27637.1.S1_at--488--8811NONE
TGTTGCACCGCAACTACAGTTCCTT
NONE
OsAffx.27637.1.S1_at--97--5091Chr06:8176911..8176935 (25 bp)
GCAACTACAGTTCCTTCAATTCCGT
NONE
OsAffx.27637.1.S1_at--86--2531Chr06:8176913..8176937 (25 bp)
AACTACAGTTCCTTCAATTCCGTGG
NONE
OsAffx.27637.1.S1_at--200--9871Chr06:8176916..8176940 (25 bp)
TACAGTTCCTTCAATTCCGTGGCAC
NONE
OsAffx.27637.1.S1_at--723--1231Chr06:8176919..8176943 (25 bp)
AGTTCCTTCAATTCCGTGGCACTGC
NONE
OsAffx.27637.1.S1_at--1137--3131Chr06:8176928..8176952 (25 bp)
AATTCCGTGGCACTGCCGTATACAA
NONE
OsAffx.27637.1.S1_at--761--7531Chr06:8176934..8177027 (25 bp)
GTGGCACTGCCGTATACAAGCTGCA
NONE
OsAffx.27637.1.S1_at--803--8491Chr06:8176935..8177028 (25 bp)
TGGCACTGCCGTATACAAGCTGCAG
NONE
Target Sequence 
GAGAGGGCCCCGCTTGCGGCGCGACCGGCGGGGGAGGAGGAGGAGGGGAGGCGCGCGGGCGGGTGGCGGCGGCGGCGGAG
GAGGCGCCAGCGCCGGGGCAGCCGCAGCCTCGGCGGGAGCTGGTGGCGGCTCTGCCGCGACGACGCCGGTGGGCCGCCGA
CGTCGCTGGGGGAGTTCCTCGACATGGAGAGGCAGCTCGCCGGCGCGGACTTCCTCTGCGACGGCTTCGGCGGCTGCGGT
TCGGATCGGGAGGCTTTTGTTGCTGTTGCACCGCAACTACAGTTCCTTCAATTCCGTGGCACTGCCGTATACAAGCTGCA
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27637.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis