Browse Element(s) Details


OsAffx.27641.1.S1_at

Description tigr:9634.m01482
TID=OsAffx.27641.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1478011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g14770Os.55250.1.S1_at1/116+8368640..8368990hypothetical protein
LOC_Os06g14780OsAffx.27641.1.S1_at11/116+8374476..8375775expressed protein
LOC_Os06g14790NANA6+8388606..8389343hypothetical protein
LOC_Os06g14800OsAffx.4840.1.S1_at10/116+8393887..8396837hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27641.1.S1_at--875--2691Chr06:8375301..8375325 (25 bp)
AAGCTCATGGGCGAGAGCCGGGACT
LOC_Os06g14780
OsAffx.27641.1.S1_at--341--5931Chr06:8375289..8375313 (25 bp)
GAGAGCCGGGACTCCGCCGAGGCGG
LOC_Os06g14780
OsAffx.27641.1.S1_at--907--7651Chr06:8375190..8375214 (25 bp)
GGGATACTGCGGACGCCCGAGCGGA
LOC_Os06g14780
OsAffx.27641.1.S1_at--231--8291Chr06:8375124..8375148 (25 bp)
GGCTTCGCGCGGACGCCGGAGGTGA
LOC_Os06g14780
OsAffx.27641.1.S1_at--224--1051Chr06:8375105..8375129 (25 bp)
AGGTGAGCCCGAGGTTCGCGGCGAC
LOC_Os06g14780
OsAffx.27641.1.S1_at--690--8251Chr06:8375070..8375094 (25 bp)
GGCACCGGGTTCATGATGCCGACGC
LOC_Os06g14780
OsAffx.27641.1.S1_at--173--6751Chr06:8375062..8375086 (25 bp)
GTTCATGATGCCGACGCCAGAGAGG
LOC_Os06g14780
OsAffx.27641.1.S1_at--254--9631Chr06:8375060..8375084 (25 bp)
TCATGATGCCGACGCCAGAGAGGTC
LOC_Os06g14780
OsAffx.27641.1.S1_at--1002--1811Chr06:8375049..8375073 (25 bp)
ACGCCAGAGAGGTCAGGGCTGCTGA
LOC_Os06g14780
OsAffx.27641.1.S1_at--586--3951Chr06:8374988..8375012 (25 bp)
CGGAGTACTCGTCGCGAGACGTCAA
LOC_Os06g14780
OsAffx.27641.1.S1_at--215--9911Chr06:8374983..8375007 (25 bp)
TACTCGTCGCGAGACGTCAAGGCCG
LOC_Os06g14780
Target Sequence 
AAGCTCATGGGCGAGAGCCGGGACTCCGCCGAGGCGGCCGCCAAGATCATGCAGCTGTGCGCCGCGGCCAACGCCAACGG
CGGCGCGAGCGGCGCCGCGACGCCCGAGAGGGGGATACTGCGGACGCCCGAGCGGAGCCCGCGGTTCATCCCCACGCCGG
ACTGGGGCGTCGCCGGTGGCTTCGCGCGGACGCCGGAGGTGAGCCCGAGGTTCGCGGCGACGCCGGAGTGGGGCACCGGG
TTCATGATGCCGACGCCAGAGAGGTCAGGGCTGCTGAGGACGCCGGAGAGGTGGCCGACGCTGCCGCGCACGCCGGAGTA
CTCGTCGCGAGACGTCAAGGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27641.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis